Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014026.1 Corchorus olitorius cultivar O-4 contig14059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11760
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37


Found at i:4956 original size:2 final size:2

Alignment explanation


    Indices: 4944--4973  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       4934 CTAGTGTCTT

                                                          
       4944 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4974 TAAGTATACA


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   26  0.96

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Found at i:7628 original size:30 final size:30

Alignment explanation


    Indices: 7580--7650  Score: 97
    Period size: 30  Copynumber: 2.4  Consensus size: 30

       7570 GAGATGAGCG

                      *                *  
       7580 AATAAGGGTATAACGTTTTCGTGTTTTGCA
          1 AATAAGGGTAAAACGTTTTCGTGTTTTACA

                 *       *               *
       7610 AATAAAGGTAAAATGTTTTCGTGTTTTACC
          1 AATAAGGGTAAAACGTTTTCGTGTTTTACA

                       
       7640 AATAAGGGTAA
          1 AATAAGGGTAA

       7651 GAACCACAAC


Statistics
Matches: 35,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   35  1.00

ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37


Consensus pattern (30 bp):   
AATAAGGGTAAAACGTTTTCGTGTTTTACA
Done.