Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014030.1 Corchorus olitorius cultivar O-4 contig14063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28766

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
535--618
2
46.0
2
77
17
85
50
3
0
46
1.19
543--613
13
5.8
13
74
15
53
50
4
0
45
1.21
541--615
15
4.9
15
79
12
80
50
4
0
45
1.20
539--617
17
4.9
17
76
17
87
50
3
0
45
1.19
3312--3344
17
2.0
17
88
5
50
48
18
0
33
1.48
5126--5165
20
2.0
20
100
0
80
35
35
10
20
1.86
6736--6801
33
2.0
33
91
5
107
25
21
13
39
1.90
7321--7386
33
2.0
33
93
0
114
25
19
13
40
1.89
13613--13875
22
11.9
22
71
10
160
35
9
15
39
1.79
14053--14175
22
5.5
22
79
6
108
43
11
8
36
1.70
14391--14475
42
2.0
42
86
4
118
32
8
17
41
1.79
14175--14788
22
28.7
22
65
12
109
37
9
15
37
1.80
14751--14818
22
3.1
22
89
0
100
47
7
4
41
1.51
15055--15281
46
5.0
46
89
5
356
37
18
10
33
1.85
15059--15281
87
2.5
89
88
5
333
36
18
10
34
1.86
17313--17471
63
2.5
63
83
4
203
40
5
8
45
1.57
19189--19530
163
2.1
163
96
3
638
30
11
9
48
1.70
19506--19569
3
21.7
3
96
3
121
34
0
0
65
0.93

Tables:   1

The End!