Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014032.1 Corchorus olitorius cultivar O-4 contig14065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3101
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29


Found at i:2102 original size:16 final size:17

Alignment explanation


    Indices: 2073--2110  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       2063 AAAAATAAAC

                             
       2073 AAAAATAAAAGAAAAAG
          1 AAAAATAAAAGAAAAAG

                     *      *
       2090 AAAAAT-AACGAAAAAT
          1 AAAAATAAAAGAAAAAG

                 
       2106 AAAAA
          1 AAAAA

       2111 GATAAGGGTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  16   13  0.68
  17    6  0.32

ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08


Consensus pattern (17 bp):   
AAAAATAAAAGAAAAAG
Done.