Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014033.1 Corchorus olitorius cultivar O-4 contig14066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41527

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2502--2645
76
1.9
76
80
8
168
17
29
29
24
1.97
13426--13473
11
4.7
11
78
21
52
33
20
6
39
1.78
14787--14822
18
2.1
18
89
5
56
38
8
8
44
1.65
22416--22463
11
4.7
11
78
21
52
33
20
6
39
1.78
25826--25868
21
2.0
21
86
8
61
27
18
20
32
1.96
26860--26884
5
5.0
5
100
0
50
80
0
0
20
0.72
32054--32138
33
2.6
33
94
1
145
44
4
14
36
1.66
32462--32539
38
2.1
38
85
9
106
55
3
3
37
1.37
32511--32543
14
2.3
15
89
5
50
51
3
0
45
1.16
32466--32553
38
2.2
38
78
17
90
54
4
2
38
1.33
33310--33336
5
5.4
5
100
0
54
59
0
18
22
1.38
39152--39198
22
2.1
22
84
7
60
61
2
12
23
1.42

Tables:   1

The End!