Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014034.1 Corchorus olitorius cultivar O-4 contig14067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30608

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3408--3905
30
16.9
27
79
10
176
30
18
20
31
1.96
3494--3931
30
14.7
30
85
5
503
30
19
20
29
1.97
3407--3931
90
5.9
90
79
7
527
30
18
19
31
1.96
3407--3931
179
2.9
179
88
3
713
30
18
19
31
1.96
5002--5055
22
2.3
24
81
12
60
24
22
5
48
1.72
9333--9464
66
2.0
66
89
0
201
45
13
16
24
1.84
12155--12191
18
2.2
17
86
13
51
48
0
2
48
1.15
20734--20784
26
2.0
26
100
0
102
52
7
19
19
1.70
29344--29418
27
2.7
28
87
4
98
20
16
26
37
1.93

Tables:   1

The End!