Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014035.1 Corchorus olitorius cultivar O-4 contig14068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1713
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25


Found at i:707 original size:22 final size:22

Alignment explanation


    Indices: 676--717  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        666 CTCGGTGGCA

                                  
        676 CCCGGACATGACTAGGCCATAG
          1 CCCGGACATGACTAGGCCATAG

                 *       *      
        698 CCCGGTCATGACTCGGCCAT
          1 CCCGGACATGACTAGGCCAT

        718 GCGCCGCGCC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.21, C:0.36, G:0.26, T:0.17


Consensus pattern (22 bp):   
CCCGGACATGACTAGGCCATAG
Done.