Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014039.1 Corchorus olitorius cultivar O-4 contig14072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64475

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
646--696
19
2.7
19
77
14
61
50
1
0
47
1.12
2924--3015
21
4.4
21
93
2
150
25
25
19
30
1.98
11037--11068
12
2.6
13
85
14
50
68
0
15
15
1.21
11484--11549
6
9.7
7
79
17
61
72
12
0
15
1.12
11471--11548
6
13.3
6
77
20
60
73
12
0
14
1.11
11483--11542
27
2.1
28
87
6
86
73
11
0
15
1.10
11864--11893
6
4.8
6
92
8
51
80
0
16
3
0.85
13274--13647
168
2.2
167
88
1
561
29
21
14
33
1.94
22480--22523
21
2.1
21
83
8
54
25
4
6
63
1.38
23526--23555
16
1.9
16
93
6
53
36
3
13
46
1.60
25375--25991
30
20.6
30
85
4
755
21
15
18
44
1.86
31072--31160
21
4.2
21
92
2
144
26
24
19
29
1.98
37423--37456
11
2.9
12
86
8
52
32
11
17
38
1.86
37424--37482
29
2.0
30
86
6
84
38
10
18
32
1.84
38770--38814
23
1.9
24
86
4
65
42
13
11
33
1.79
38908--38950
23
1.9
22
90
4
68
53
9
11
25
1.67
41843--41893
21
2.5
20
83
6
57
13
50
21
13
1.76
41930--41975
21
2.2
21
92
0
74
10
45
15
28
1.79
42123--42184
22
2.9
21
78
4
61
17
45
19
17
1.86
42274--42302
12
2.4
12
100
0
58
34
0
34
31
1.58
42516--42549
11
2.9
12
86
8
52
32
11
17
38
1.86
42517--42575
29
2.0
30
86
6
84
38
10
18
32
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45650--45740
27
3.4
27
95
0
164
19
19
24
36
1.95
47362--47418
30
1.9
30
92
0
96
36
29
21
12
1.90
47439--47472
15
2.3
15
94
0
59
44
5
14
35
1.70
50296--50421
28
4.5
28
89
3
182
14
16
23
45
1.84
50295--50421
57
2.3
56
90
2
193
14
16
23
45
1.84
55434--55599
88
1.9
87
87
3
244
18
20
22
37
1.94
55434--55639
29
7.1
29
84
6
240
16
18
22
41
1.90
55434--55620
88
2.1
87
85
3
243
17
19
21
40
1.91
60958--61060
37
2.7
37
92
3
161
40
17
11
30
1.85
60885--61070
37
5.0
35
78
13
153
40
17
13
27
1.87
63159--63339
90
2.0
90
95
0
326
24
34
14
25
1.94
64440--64475
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!