Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014040.1 Corchorus olitorius cultivar O-4 contig14073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35541

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
826--867
22
1.9
22
85
0
57
64
14
0
21
1.29
3238--3290
28
1.9
27
85
11
72
16
16
9
56
1.65
10570--10603
6
5.8
6
89
6
52
2
14
0
82
0.79
10571--10602
17
1.9
17
93
6
57
3
15
0
81
0.82
15127--15375
29
8.7
29
77
9
215
17
18
22
40
1.91
15128--15367
87
2.8
87
92
1
385
17
18
23
40
1.92
15125--15375
58
4.4
56
79
7
238
17
18
23
40
1.91
15993--16037
9
4.8
9
88
5
63
75
13
0
11
1.05
16656--16805
50
3.0
50
91
0
237
34
16
12
37
1.86
17475--17749
50
5.5
50
96
0
514
30
28
13
28
1.94
17960--18123
29
5.7
29
78
7
183
18
18
23
40
1.91
17960--18123
57
2.9
56
82
7
204
18
18
23
40
1.91
30537--30741
59
3.5
59
93
1
331
25
15
18
40
1.89
33635--33679
21
2.1
21
84
8
56
28
28
24
17
1.97
35276--35327
11
5.2
10
77
15
54
7
7
3
80
1.00
35272--35327
29
1.9
29
92
7
96
7
8
3
80
1.01
35274--35318
18
2.6
18
85
3
56
6
6
4
82
0.95

Tables:   1

The End!