Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014041.1 Corchorus olitorius cultivar O-4 contig14074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11894
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Found at i:2283 original size:36 final size:36
Alignment explanation
Indices: 2222--3154 Score: 882
Period size: 36 Copynumber: 26.1 Consensus size: 36
2212 GTCCATGCAG
*
2222 TAAGT-AAATACAATCAAAGACTTAATTCAGGGTAAT
1 TAAGTAAAAT-CAAGCAAAGACTTAATTCAGGGTAAT
* * *
2258 TAAGTAAAAACAAGCACAGATTTAATTCAGGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
* *
2294 TTAGTAAAAGCAAGCAAAGACTTAATTCAGGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
* *
2330 TAAGT-AAATACAAGCACAGACTTAATACAGGGTAAT
1 TAAGTAAAAT-CAAGCAAAGACTTAATTCAGGGTAAT
* *
2366 TAAGTAAAAGCAAGCAGAGACTTAATTTCAGGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
* *
2403 TTAGT-AAATACAATCAAAGACTTAATTCAGGGTAAT
1 TAAGTAAAAT-CAAGCAAAGACTTAATTCAGGGTAAT
*
2439 TAAGTAAAAGC-AGTCAAAGACTTAATTCAGGGTAAT
1 TAAGTAAAATCAAG-CAAAGACTTAATTCAGGGTAAT
* *
2475 TAAGTAAAAGCAAGCAAAAACTTAATTCAGGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
* * * *
2511 TAAGT-AAATACCAGCACATACTTAATTCAGGGCAAT
1 TAAGTAAAAT-CAAGCAAAGACTTAATTCAGGGTAAT
2547 TAAGT-AAATC-AGTCAAAGACTTAATTCAGGGTAAT
1 TAAGTAAAATCAAG-CAAAGACTTAATTCAGGGTAAT
*
2582 TAGGTAAAATCAAGCACAA-ACTTAATTCAGGGTAAT
1 TAAGTAAAATCAAGCA-AAGACTTAATTCAGGGTAAT
* * *
2618 TAGGT-AAATCAAGCAAAGACTTAATTTCAAGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
* *
2654 TAAGT-AAATCAAGCAAAGACTTAATTTCATGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
** * *
2690 TGGGTAAGAA-CAAGCAAAGACTTAATTTCAAGGAAAT
1 TAAGTAA-AATCAAGCAAAGACTTAA-TTCAGGGTAAT
** * *
2727 TTGGTAAAATCAAGC----ACATAATTCAGAGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
* *
2759 TAAGT-AAATCAAGCAAAGACTTAATTTCAAGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
* *
2795 TAAGT-AAATCAAGCAAAGACTTAATTTCAAGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
* * * *
2831 TAGGTAAAAACAAGCAAAGACTTAATCTCAAGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAAT-TCAGGGTAAT
* * * *
2868 TAGGTAAAATCAAGCACATACTTAATTTAGGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
* *
2904 TAAGT-AAATCAAGCAAAGACTTAATTTCAAGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
* *
2940 TAAGT-AAATCAAGCAAAGACTTAATTTCAAGGAAAT
1 TAAGTAAAATCAAGCAAAGACTTAA-TTCAGGGTAAT
* * *
2976 TAAGT-AAATCAA-CGAAGACTTGATTCGGGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
* * * *
3010 CAAGTAAACA-CAATCAAAGACTTAATTCAGAGAAAT
1 TAAGTAAA-ATCAAGCAAAGACTTAATTCAGGGTAAT
*
3046 TAAGTAAAGAGTCAA--AAA-ACTTAATTCTGGGTAAT
1 TAAGTAAA-A-TCAAGCAAAGACTTAATTCAGGGTAAT
* * * *
3081 TAAGTAGAGTTAA--TAA-ACTTAATTC-GAGGTAAT
1 TAAGTAAAATCAAGCAAAGACTTAATTCAG-GGTAAT
* * *
3114 TAAGTAAAGTCAA-TAAAGAACTTAATCCAGGGTAAT
1 TAAGTAAAATCAAGCAAAG-ACTTAATTCAGGGTAAT
3150 TAAGT
1 TAAGT
3155 GGGGACATTA
Statistics
Matches: 773, Mismatches: 88, Indels: 72
0.83 0.09 0.08
Matches are distributed among these distances:
31 9 0.01
32 12 0.02
33 36 0.05
34 18 0.02
35 104 0.13
36 457 0.59
37 132 0.17
38 5 0.01
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.26
Consensus pattern (36 bp):
TAAGTAAAATCAAGCAAAGACTTAATTCAGGGTAAT
Found at i:2510 original size:145 final size:144
Alignment explanation
Indices: 2222--3053 Score: 921
Period size: 145 Copynumber: 5.8 Consensus size: 144
2212 GTCCATGCAG
* * * * *
2222 TAAGT-AAATACAATCAAAGACTTAA-TTCAGGGTAATTAAGTAAAAACAAGCACAGATTTAATT
1 TAAGTAAAAT-CAAGCAAAGACTTAATTTCAGGGAAATTAAGTAAATACAAGCAAAGACTTAATT
* *
2285 CAGGGTAATTTAGTAAAAGCAAGCAAAGACTTAATTCAGGGTAATTAAGTAAATACAAGCACAGA
65 CAGGGTAATTAAGTAAAA-CAAGCAAAGACTTAATTCAGGGTAATTAAGTAAAT-CAAGCAAAGA
* * *
2350 CTTAA-TACAGGGTAAT
128 CTTAATTTCAAGGAAAT
* * * * *
2366 TAAGTAAAAGCAAGCAGAGACTTAATTTCAGGGTAATTTAGTAAATACAATCAAAGACTTAATTC
1 TAAGTAAAATCAAGCAAAGACTTAATTTCAGGGAAATTAAGTAAATACAAGCAAAGACTTAATTC
* *
2431 AGGGTAATTAAGTAAAAGC-AGTCAAAGACTTAATTCAGGGTAATTAAGTAAAAGCAAGCAAAAA
66 AGGGTAATTAAGTAAAA-CAAG-CAAAGACTTAATTCAGGGTAATTAAGT-AAATCAAGCAAAGA
* *
2495 CTTAA-TTCAGGGTAAT
128 CTTAATTTCAAGGAAAT
* * * *
2511 TAAGT-AAATACCAGCACATACTTAA-TTCAGGGCAATTAAGTAAAT-C-AGTCAAAGACTTAAT
1 TAAGTAAAAT-CAAGCAAAGACTTAATTTCAGGGAAATTAAGTAAATACAAG-CAAAGACTTAAT
* *
2572 TCAGGGTAATTAGGTAAAATCAAGCACAA-ACTTAATTCAGGGTAATTAGGTAAATCAAGCAAAG
64 TCAGGGTAATTAAGTAAAA-CAAGCA-AAGACTTAATTCAGGGTAATTAAGTAAATCAAGCAAAG
2636 ACTTAATTTCAAGGAAAT
127 ACTTAATTTCAAGGAAAT
* **
2654 TAAGT-AAATCAAGCAAAGACTTAATTTCATGGAAATTGGGTAAGA-ACAAGCAAAGACTTAATT
1 TAAGTAAAATCAAGCAAAGACTTAATTTCAGGGAAATTAAGTAA-ATACAAGCAAAGACTTAA-T
* * ** * *
2717 TCAAGGAAATTTGGTAAAATCAAGC----ACATAATTCAGAGTAATTAAGTAAATCAAGCAAAGA
64 TCAGGGTAATTAAGTAAAA-CAAGCAAAGACTTAATTCAGGGTAATTAAGTAAATCAAGCAAAGA
2778 CTTAATTTCAAGGAAAT
128 CTTAATTTCAAGGAAAT
* * *
2795 TAAGT-AAATCAAGCAAAGACTTAATTTCAAGGAAATTAGGTAAAAACAAGCAAAGACTTAATCT
1 TAAGTAAAATCAAGCAAAGACTTAATTTCAGGGAAATTAAGTAAATACAAGCAAAGACTTAAT-T
* * * * * *
2859 CAAGGAAATTAGGTAAAATCAAGCACATACTTAATTTAGGGTAATTAAGTAAATCAAGCAAAGAC
65 CAGGGTAATTAAGTAAAA-CAAGCAAAGACTTAATTCAGGGTAATTAAGTAAATCAAGCAAAGAC
2924 TTAATTTCAAGGAAAT
129 TTAATTTCAAGGAAAT
* * *
2940 TAAGT-AAATCAAGCAAAGACTTAATTTCAAGGAAATTAAGTAAAT-CAA-CGAAGACTTGATTC
1 TAAGTAAAATCAAGCAAAGACTTAATTTCAGGGAAATTAAGTAAATACAAGCAAAGACTTAATTC
* * * * *
3002 GGGGTAATCAAGTAAACACAATCAAAGACTTAATTCAGAGAAATTAAGTAAA
66 AGGGTAATTAAGTAAA-ACAAGCAAAGACTTAATTCAGGGTAATTAAGTAAA
3054 GAGTCAAAAA
Statistics
Matches: 606, Mismatches: 61, Indels: 44
0.85 0.09 0.06
Matches are distributed among these distances:
140 2 0.00
141 131 0.22
142 71 0.12
143 98 0.16
144 61 0.10
145 240 0.40
146 3 0.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (144 bp):
TAAGTAAAATCAAGCAAAGACTTAATTTCAGGGAAATTAAGTAAATACAAGCAAAGACTTAATTC
AGGGTAATTAAGTAAAACAAGCAAAGACTTAATTCAGGGTAATTAAGTAAATCAAGCAAAGACTT
AATTTCAAGGAAAT
Found at i:2824 original size:18 final size:18
Alignment explanation
Indices: 2767--2825 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
2757 ATTAAGTAAA
2767 TCAAGCAAAGACTTAATT
1 TCAAGCAAAGACTTAATT
* * ** *
2785 TCAAGGAAATTAAGTAA-A
1 TCAAGCAAA-GACTTAATT
2803 TCAAGCAAAGACTTAATT
1 TCAAGCAAAGACTTAATT
2821 TCAAG
1 TCAAG
2826 GAAATTAGGT
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
17 4 0.14
18 21 0.72
19 4 0.14
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (18 bp):
TCAAGCAAAGACTTAATT
Found at i:2951 original size:18 final size:18
Alignment explanation
Indices: 2930--2987 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
2920 AGACTTAATT
2930 TCAAGGAAATTAAGTAAA
1 TCAAGGAAATTAAGTAAA
* * ** *
2948 TCAAGCAAA-GACTTAATT
1 TCAAGGAAATTAAGTAA-A
2966 TCAAGGAAATTAAGTAAA
1 TCAAGGAAATTAAGTAAA
2984 TCAA
1 TCAA
2988 CGAAGACTTG
Statistics
Matches: 28, Mismatches: 10, Indels: 4
0.67 0.24 0.10
Matches are distributed among these distances:
17 4 0.14
18 20 0.71
19 4 0.14
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (18 bp):
TCAAGGAAATTAAGTAAA
Found at i:6359 original size:14 final size:14
Alignment explanation
Indices: 6322--6359 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
6312 TATTTTCAGG
*
6322 AAAAAGGTTTTCAA
1 AAAAAGGTTTCCAA
6336 AAATAA-GTTTCCAA
1 AAA-AAGGTTTCCAA
6350 AAAAAGGTTT
1 AAAAAGGTTT
6360 TGGGTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 2 0.10
14 17 0.81
15 2 0.10
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (14 bp):
AAAAAGGTTTCCAA
Found at i:7079 original size:15 final size:16
Alignment explanation
Indices: 7059--7091 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7049 AGCAACCAGT
7059 AAAAAAAG-AAAAGAA
1 AAAAAAAGAAAAAGAA
*
7074 AAAAAAGGAAAAAGAA
1 AAAAAAAGAAAAAGAA
7090 AA
1 AA
7092 GATAGAGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAGAA
Found at i:7084 original size:10 final size:11
Alignment explanation
Indices: 7061--7093 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7051 CAACCAGTAA
7061 AAAAAGAAAAG
1 AAAAAGAAAAG
*
7072 AAAAA-AAAGG
1 AAAAAGAAAAG
7082 AAAAAGAAAAG
1 AAAAAGAAAAG
7093 A
1 A
7094 TAGAGCTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:8162 original size:66 final size:66
Alignment explanation
Indices: 8056--8277 Score: 333
Period size: 66 Copynumber: 3.4 Consensus size: 66
8046 TGTCTTAGGC
*
8056 AGACTTTCAGCGTCTCAAGGTAGACATCGAAACATCTCAGGGTTAGACATCCAAGCGTCTCAGAG
1 AGACTTTCAGCGTCTCAGGGTAGACATCGAAACATCTCAGGGTTAGACATCCAAGCGTCTCAGAG
8121 T
66 T
8122 AGACTTTCAGCGTCTCAGGGTAGACATCGAAACATCTCAGGGTTAGACATCCAAGCGTCTCAGAG
1 AGACTTTCAGCGTCTCAGGGTAGACATCGAAACATCTCAGGGTTAGACATCCAAGCGTCTCAGAG
8187 T
66 T
* * * * *
8188 AGACTTTCAGCGTCTCAGGGTAGACATC-AAATCGTCTCAGAG-TAGACTTTC-AGCGTCTCAGG
1 AGACTTTCAGCGTCTCAGGGTAGACATCGAAA-CATCTCAGGGTTAGACATCCAAGCGTCTCAGA
8250 GT
65 GT
* *
8252 AGACTTTTAAGCGTCTAAGGGTAGAC
1 AGAC-TTTCAGCGTCTCAGGGTAGAC
8278 TTTCAAGTGT
Statistics
Matches: 146, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
64 16 0.11
65 29 0.20
66 101 0.69
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (66 bp):
AGACTTTCAGCGTCTCAGGGTAGACATCGAAACATCTCAGGGTTAGACATCCAAGCGTCTCAGAG
T
Found at i:8235 original size:43 final size:43
Alignment explanation
Indices: 8019--8385 Score: 255
Period size: 43 Copynumber: 8.5 Consensus size: 43
8009 GCGATCTTTC
* * * * *
8019 TTCAGCGTCTCTGGGCAGACATTC-AAGTGTCTTA-GGCAGACT
1 TTCAGCGTCTCAGGGTAGACA-TCAAAGCGTCTCAGGGTAGACT
* * *
8061 TTCAGCGTCTCAAGGTAGACATCGAAA-CATCTCAGGGTTAGACA
1 TTCAGCGTCTCAGGGTAGACATC-AAAGCGTCTCAGGG-TAGACT
* * *
8105 TCCAAGCGTCTCAGAGTAGACTTTC--AGCGTCTCAGGGTAGAC-
1 TTC-AGCGTCTCAGGGTAGAC-ATCAAAGCGTCTCAGGGTAGACT
* * * * *
8147 ATCGAAACATCTCAGGGTTAGACATCCAAGCGTCTCAGAGTAGACT
1 TTC--AGCGTCTCAGGG-TAGACATCAAAGCGTCTCAGGGTAGACT
* *
8193 TTCAGCGTCTCAGGGTAGACATCAAATCGTCTCAGAGTAGACT
1 TTCAGCGTCTCAGGGTAGACATCAAAGCGTCTCAGGGTAGACT
* ** *
8236 TTCAGCGTCTCAGGGTAGACTTTTAAGCGTCTAAGGGTAGACT
1 TTCAGCGTCTCAGGGTAGACATCAAAGCGTCTCAGGGTAGACT
* * * *
8279 TTCAAGTGTCTCAGGGCAGACTTTC--AGGGTCTCAGGGTAGACT
1 TTC-AGCGTCTCAGGGTAGAC-ATCAAAGCGTCTCAGGGTAGACT
* * ** * * * *
8322 TTCAGCATCTCAGGGCAGATTTCCAAGCGTCTCGGGGCAAACT
1 TTCAGCGTCTCAGGGTAGACATCAAAGCGTCTCAGGGTAGACT
* *
8365 TCCAAGCGTCTCAGGGCAGAC
1 TTC-AGCGTCTCAGGGTAGAC
8386 TTTCAGATGT
Statistics
Matches: 262, Mismatches: 46, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
41 5 0.02
42 37 0.14
43 123 0.47
44 60 0.23
45 33 0.13
46 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (43 bp):
TTCAGCGTCTCAGGGTAGACATCAAAGCGTCTCAGGGTAGACT
Found at i:8404 original size:22 final size:22
Alignment explanation
Indices: 8022--8413 Score: 259
Period size: 22 Copynumber: 18.0 Consensus size: 22
8012 ATCTTTCTTC
* *
8022 AGCGTCTCTGGGCAGACATTCA
1 AGCGTCTCAGGGCAGACTTTCA
* *
8044 AGTGTCTTA-GGCAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
* * *
8064 AGCGTCTCAAGGTAGAC-ATCGA
1 AGCGTCTCAGGGCAGACTTTC-A
* * * * *
8086 AACATCTCAGGGTTAGACATCCA
1 AGCGTCTCAGGG-CAGACTTTCA
* *
8109 AGCGTCTCAGAGTAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
* *
8130 AGCGTCTCAGGGTAGAC-ATCGA
1 AGCGTCTCAGGGCAGACTTTC-A
* * * * *
8152 AACATCTCAGGGTTAGACATCCA
1 AGCGTCTCAGGG-CAGACTTTCA
* *
8175 AGCGTCTCAGAGTAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
* *
8196 AGCGTCTCAGGGTAGAC-ATCAA
1 AGCGTCTCAGGGCAGACTTTC-A
* * *
8218 ATCGTCTCAGAGTAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
* *
8239 AGCGTCTCAGGGTAGACTTTTA
1 AGCGTCTCAGGGCAGACTTTCA
* *
8261 AGCGTCTAAGGGTAGACTTTCA
1 AGCGTCTCAGGGCAGACTTTCA
*
8283 AGTGTCTCAGGGCAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
* *
8304 AGGGTCTCAGGGTAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
*
8325 AGCATCTCAGGGCAGA-TTTCCA
1 AGCGTCTCAGGGCAGACTTT-CA
* * *
8347 AGCGTCTCGGGGCAAACTTCCA
1 AGCGTCTCAGGGCAGACTTTCA
8369 AGCGTCTCAGGGCAGACTTTC-
1 AGCGTCTCAGGGCAGACTTTCA
* * *
8390 AGATGTCTCAAGGCAGATTTTCA
1 AG-CGTCTCAGGGCAGACTTTCA
8413 A
1 A
8414 ACCTCAAGGC
Statistics
Matches: 295, Mismatches: 57, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
20 16 0.05
21 101 0.34
22 141 0.48
23 35 0.12
24 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (22 bp):
AGCGTCTCAGGGCAGACTTTCA
Found at i:9390 original size:3 final size:3
Alignment explanation
Indices: 9382--9453 Score: 135
Period size: 3 Copynumber: 24.0 Consensus size: 3
9372 ATATATATAT
9382 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
9430 ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
9454 CATTTTCTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:11205 original size:40 final size:40
Alignment explanation
Indices: 11160--11235 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
11150 AATTGAGCCA
*
11160 AACAGTA-ATTAGAATCCTAAATCAGGGACTAAATTGTATC
1 AACAGTATA-TAGAATCCTAAATCAGGGACCAAATTGTATC
*
11200 AACAGTATATAGAATCCTAAATTAGGGACCAAATTG
1 AACAGTATATAGAATCCTAAATCAGGGACCAAATTG
11236 CATTTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.26
Consensus pattern (40 bp):
AACAGTATATAGAATCCTAAATCAGGGACCAAATTGTATC
Found at i:11390 original size:41 final size:41
Alignment explanation
Indices: 11287--11390 Score: 102
Period size: 41 Copynumber: 2.5 Consensus size: 41
11277 CATAAATCAA
* * * *
11287 AAATAAAATTCTAAATCCGTGACAAAATTGAATCAATAAAT
1 AAATATAACTCTAAATCAGGGACAAAATTGAATCAATAAAT
* * * * *
11328 AAATATTACTCTAGATCAGGGACAAAATTGAATTAATGACT
1 AAATATAACTCTAAATCAGGGACAAAATTGAATCAATAAAT
*
11369 AAATATCAAC-CTAAATTAGGGA
1 AAATAT-AACTCTAAATCAGGGA
11391 TCCAATTGAA
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 48 0.96
42 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (41 bp):
AAATATAACTCTAAATCAGGGACAAAATTGAATCAATAAAT
Done.