Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014044.1 Corchorus olitorius cultivar O-4 contig14077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29


Found at i:524 original size:6 final size:6

Alignment explanation


    Indices: 504--560  Score: 71
    Period size: 6  Copynumber: 9.5  Consensus size: 6

        494 CCAAGCCAGG

                                     *    * *                       
        504 AAAAGA AAAA-A AAAAGGA AAAGGA AGAGGA AAAAGA AAAAGA AAAAGA
          1 AAAAGA AAAAGA AAAA-GA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA

                      
        552 AAAAGA AAA
          1 AAAAGA AAA

        561 TAAAATAAAA


Statistics
Matches: 45,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
   5    5  0.11
   6   36  0.80
   7    4  0.09

ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00


Consensus pattern (6 bp):   
AAAAGA

Done.