Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014045.1 Corchorus olitorius cultivar O-4 contig14078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68832

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1248--1330
22
3.8
22
74
3
78
42
10
12
34
1.77
1513--1538
6
4.3
6
100
0
52
69
15
0
15
1.20
2773--2804
2
16.0
2
100
0
64
50
0
0
50
1.00
5145--5203
26
2.2
26
84
3
73
28
10
1
59
1.40
5178--5416
126
1.9
126
85
2
329
35
10
1
52
1.44
5560--5684
31
4.1
31
93
3
218
28
15
13
42
1.85
5564--5694
30
4.3
31
93
1
212
25
16
13
44
1.85
5560--5684
61
2.0
61
95
3
225
28
15
13
42
1.85
15048--15092
22
2.2
22
84
11
60
37
24
13
24
1.91
16594--16751
35
4.5
35
82
0
183
44
20
18
16
1.86
19042--19078
17
2.2
17
95
0
65
32
21
10
35
1.88
19825--19885
29
2.1
29
85
11
81
21
22
13
42
1.87
20065--20124
29
2.1
29
90
6
95
50
13
16
20
1.78
30627--30660
14
2.4
14
95
0
59
23
8
0
67
1.18
31114--31175
25
2.4
26
94
2
108
12
11
35
40
1.80
31556--31608
26
2.0
26
96
0
97
13
26
15
45
1.82
32868--32901
17
1.9
17
88
5
50
58
5
0
35
1.22
36954--37035
2
44.5
2
68
16
52
43
1
0
54
1.07
36952--37036
14
5.8
15
74
13
79
43
1
0
55
1.07
37748--38399
325
2.0
324
97
0
1243
40
11
6
41
1.67
39656--39698
22
2.0
22
85
0
59
53
0
39
6
1.28
40695--40776
29
2.7
31
75
11
89
19
18
25
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45824--45899
36
2.1
36
95
0
134
38
0
31
30
1.58
57040--57065
2
13.0
2
100
0
52
50
0
0
50
1.00
57371--57438
27
2.5
25
71
15
64
38
2
10
48
1.52
58512--58884
199
1.9
199
95
0
674
31
17
21
29
1.96
58896--58948
25
2.1
25
92
0
88
54
7
11
26
1.62
61214--61329
57
2.0
57
98
0
223
32
24
11
31
1.90

Tables:   1

The End!