genome.fa.s14046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014046.1 Corchorus olitorius cultivar O-4 contig14079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59050

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1840--1877	18	2.2	18	90	4	60	23	15	10	50	1.75
2775--2807	17	2.0	17	88	5	50	39	12	6	42	1.67
5156--5197	22	2.0	21	90	4	66	35	14	4	45	1.66
5143--5197	21	2.5	21	77	11	58	41	14	9	34	1.77
7391--7468	40	2.0	40	94	0	138	35	24	5	34	1.78
11482--11520	14	2.7	14	88	4	51	74	0	7	17	1.05
11482--11521	15	2.7	15	88	0	53	75	0	7	17	1.03
28003--28062	25	2.4	25	88	0	84	3	30	8	58	1.44
28914--28969	22	2.6	23	88	8	82	35	5	41	17	1.73
30241--30299	27	2.2	27	84	0	73	13	10	55	20	1.66
43380--43459	37	2.2	37	95	0	142	50	13	17	18	1.79
49998--50036	13	3.0	13	84	0	51	48	0	20	30	1.50
50026--50074	21	2.4	21	89	3	73	53	2	20	24	1.56
50004--50103	13	8.5	13	70	22	69	50	1	20	29	1.55
51806--51882	27	2.9	27	77	9	70	24	25	27	22	2.00
51892--51976	27	3.2	27	81	5	84	24	24	27	23	2.00
51824--52459	94	6.6	94	76	15	541	24	25	26	24	2.00
51987--52097	27	4.1	27	81	7	129	23	27	27	21	1.99
51892--52175	121	2.3	121	86	3	403	24	26	25	23	2.00
51987--52097	54	2.1	53	84	5	143	23	27	27	21	1.99
52102--52175	27	2.7	28	79	10	91	25	25	24	24	2.00
51806--52285	215	2.2	214	87	1	685	25	25	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52195--52285	27	3.4	27	74	7	87	25	21	25	27	2.00
52289--52477	54	3.5	54	86	3	281	22	26	30	20	1.98
51824--52394	309	1.8	309	92	0	955	24	25	26	24	2.00
52289--52608	27	11.9	27	75	12	239	22	26	29	21	1.99
56704--56769	30	2.3	28	84	5	78	51	30	7	10	1.64
56711--56769	28	2.2	28	85	8	79	50	30	8	10	1.66
56704--56769	28	2.3	29	82	10	73	51	30	7	10	1.64

Tables:   1

The End!