Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014051.1 Corchorus olitorius cultivar O-4 contig14084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2568
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29


Found at i:1864 original size:154 final size:152

Alignment explanation


    Indices: 1584--2568  Score: 1430
    Period size: 154  Copynumber: 6.5  Consensus size: 152

       1574 ATCTACATCT

                     *                             *                     *   
       1584 AAATAACAACTGTTCCAAATGAGCTAAAAACTTCACAGTAGACTAATCTCACCAAAATGATCATA
          1 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA

                                                                          *  
       1649 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAATGT
         66 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT

                                    
       1714 CACTAATGGGCCCCGATAGGCCCA
        131 CACTAATGGG--CCGATAGGCCCA

                                         *                                   
       1738 AAATAACAAGTGTTCCAAATGAGCTAAAAGCTTCACAGTGGACTAATCTCACCAAAATGATTATA
          1 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA

                         *     *          *     *                            
       1803 GTTAGGCCATAAAAAACT-TAAAGAAAAGCTTTGAGCTTTGCCAAATCGAAGACGATTCAAAACG
         66 GTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG

             *               *     
       1867 TTACTAATGGG-C-ATATGCCCA
        130 TCACTAATGGGCCGATAGGCCCA

                                                  *                      *   
       1888 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGCGGACTAATCTCACCAAAATGATAATA
          1 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA

                 *    *                             *       *                
       1953 GTTAGTCCATTAACAATGGAAATG-AAAGCATTGAGGTTTACCAAATCAAAGACGATTCAAAACG
         66 GTTAGGCCATAAACAATGGAAA-GAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG

                 *                   
       2017 TCACTTATGGGCTTCGATAGGCCCA
        130 TCACTAATGGGC--CGATAGGCCCA

                                                                       *     
       2042 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGGTTATA
          1 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA

              *  *    *  *                                                   
       2107 GTAAGTCCATTAATAATTGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG
         66 GTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACG

              *  *                   
       2172 TCTCTTATGGGCTTCGATAGGCCCA
        130 TCACTAATGGGC--CGATAGGCCCA

                                  *               *                          
       2197 AAATAACAAGTGTTCCAAATGAACTAAAAACTTCACAGCGGACTAATCTCACCAAAATGATTATA
          1 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA

                                  *                                          
       2262 GTT-GGCCATAAACAATGGAAATAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
         66 GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT

                                    
       2326 CACTAATGGGACCTGATAGGCCCA
        131 CACTAATGGG-CC-GATAGGCCCA

                     *                               *                       
       2350 AAA-ACACATGTGTTCCAAATGAGCTAAAAACTTCACAGTGTACTAATCTCACCAAAATGATTAT
          1 AAATA-ACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTAT

                      *   *     *          *     *                           
       2414 AGTTAGGCCAGAAAAAACT-TAAAGAAAAGCTTTGAGCTTTGCCAAATCGAAGACGATTCAAAAC
         65 AGTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAAC

              *               *     
       2478 GTTACTAATGGG-C-ATATGCCCA
        129 GTCACTAATGGGCCGATAGGCCCA

                             *                 *  *                          
       2500 AAATAACAAGTGTTCCATATGAGCTAAAAACTTCAGAGCGGACTAATCTCACCAAAATGATTATA
          1 AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA

                
       2565 GTTA
         66 GTTA


Statistics
Matches: 756,  Mismatches: 60, Indels: 34
        0.89            0.07        0.04

Matches are distributed among these distances:
 149    1  0.00
 150  201  0.27
 151    3  0.00
 152    3  0.00
 153  129  0.17
 154  285  0.38
 155  134  0.18

ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23


Consensus pattern (152 bp):   
AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
CACTAATGGGCCGATAGGCCCA
Done.