Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014058.1 Corchorus olitorius cultivar O-4 contig14091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10735
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Found at i:2988 original size:21 final size:22
Alignment explanation
Indices: 2949--2989 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
2939 CTAGCCAATG
2949 AACAGAAAATTGGGCCAAAAGA
1 AACAGAAAATTGGGCCAAAAGA
2971 AACA-AAAACTTGGG-CAAAA
1 AACAGAAAA-TTGGGCCAAAA
2990 CATTTTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.56, C:0.15, G:0.20, T:0.10
Consensus pattern (22 bp):
AACAGAAAATTGGGCCAAAAGA
Found at i:5857 original size:146 final size:146
Alignment explanation
Indices: 5586--5866 Score: 348
Period size: 146 Copynumber: 1.9 Consensus size: 146
5576 GGAATTTAAA
* * **
5586 GCTGAAATTTTGCAGGGACACCAAGAAATATATAGAGATGGCCCCTGAAAAATTTTAGCTCCAAA
1 GCTGAAATTTTGCAGGGACACCAAGAAATATATAGAGATGGACCCTGAAAAATTTCAGCTAAAAA
* * * * * * ** * *
5651 GGATACCCGATCTATTACCGGGGTCCCGGGATTGCTCCGATACATGAAAAATCGTGAAAAATAGA
66 AGATACCCAAACTATAACCGAGATCCCGGGACCGCTCCGATACACGAAAAATCGTAAAAAATAGA
5716 AAACATGTCATTTTGG
131 AAACATGTCATTTTGG
* *** *
5732 GCTGAAATTTTGCAGGGACATCAAG-AATAATATAGAGATGGAGTGTGCAAAATTTCAGCTAAAA
1 GCTGAAATTTTGCAGGGACACCAAGAAAT-ATATAGAGATGGACCCTGAAAAATTTCAGCTAAAA
* *
5796 AAGATGACCCAAACTATAACCGAGATCCCGGGACCGTTCCGATACACGGAAAATCGTAAAAAATA
65 AAGAT-ACCCAAACTATAACCGAGATCCCGGGACCGCTCCGATACACGAAAAATCGTAAAAAATA
5861 GAAAAC
129 GAAAAC
5867 GGGTCTTTTG
Statistics
Matches: 112, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
145 3 0.03
146 55 0.49
147 54 0.48
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (146 bp):
GCTGAAATTTTGCAGGGACACCAAGAAATATATAGAGATGGACCCTGAAAAATTTCAGCTAAAAA
AGATACCCAAACTATAACCGAGATCCCGGGACCGCTCCGATACACGAAAAATCGTAAAAAATAGA
AAACATGTCATTTTGG
Found at i:6149 original size:86 final size:87
Alignment explanation
Indices: 6051--6216 Score: 207
Period size: 86 Copynumber: 1.9 Consensus size: 87
6041 CCATTTGGGT
* **
6051 CATTCTTGGCCCCCGAAACTCATGAT-TATTA-ACCTTTGGCATTTTGGCCATATTTTGG-GTTC
1 CATTCTTGGCCCCCGAAACTCATGATGTA--ACACCTTTGGCATTTAGGCCAT-TTTTGGCCCTC
6113 GGA-GCTCATGGTGTAACAACTTTGG
63 -GATGCTCATGGTGTAACAACTTTGG
** *
6138 CATT-TTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTAGGCCATTTTTGGCCCTCGAT
1 CATTCTTGGCCCCCGAAACTCATGATGTAACACCTTTGGCATTTAGGCCATTTTTGGCCCTCGAT
6202 GCTCATGGTGTAACA
66 GCTCATGGTGTAACA
6217 CCTACGCATT
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
85 9 0.13
86 54 0.78
87 6 0.09
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (87 bp):
CATTCTTGGCCCCCGAAACTCATGATGTAACACCTTTGGCATTTAGGCCATTTTTGGCCCTCGAT
GCTCATGGTGTAACAACTTTGG
Found at i:6160 original size:38 final size:38
Alignment explanation
Indices: 6116--6574 Score: 201
Period size: 38 Copynumber: 10.9 Consensus size: 38
6106 TGGGTTCGGA
*
6116 GCTCATGGTGTAACAACTTTGGCATTTTGGCCCCCGAC
1 GCTCATGGTGTAACACCTTTGGCATTTTGGCCCCCGAC
* *
6154 GCTCATGGTGTAACACCTTTGGCATTTAGGCCATTTTTGGCCCTCGAT
1 GCTCATGGTGTAACA-C-----C-TTT-GG-CA-TTTTGGCCCCCGAC
*
6202 GCTCATGGTGTAACACCTACGCATTTTGGCCATTTTTTGCCCCCGAC
1 GCTCATGGTGT-A-A-C-AC-C--TTTGG-CA-TTTTGGCCCCCGAC
* * * *
6249 GCTCATGATGTAACACCTATGTCATTTTGACCCCCGAC
1 GCTCATGGTGTAACACCTTTGGCATTTTGGCCCCCGAC
* * *
6287 GCTCATGGTGGTTA-ACCTTTGGTATTTTAGCCATTTTTTGCGCCCGAC
1 GCTCATGGT-GTAACACCTTT-G-------G-CA-TTTTGGCCCCCGAC
* * *
6335 GCTCATGATGTAACACCTATGTCATTTT----CCCGAC
1 GCTCATGGTGTAACACCTTTGGCATTTTGGCCCCCGAC
*
6369 GCTCATGGTGGTTAAC-CTTTGGCATTTTGGCCATTTTTTGCCCCCGAC
1 GCTCATGGT-G-TAACAC-----C--TTTGG-CA-TTTTGGCCCCCGAC
* * *
6417 GCTCATGATGTAACACCTATGTCATTTTGGCCCCCGAC
1 GCTCATGGTGTAACACCTTTGGCATTTTGGCCCCCGAC
6455 GCTCATGGTGTAACACCTTTGGCATTTTGGCCATTTTTTGCCCCCGAC
1 GCTCATGGTGTAACACCTTTGGCATTTT-G---------GCCCCCGAC
* * *
6503 GCTCATGATGTAACACCTATGGCATTTTGGCCCCCAAC
1 GCTCATGGTGTAACACCTTTGGCATTTTGGCCCCCGAC
* * *
6541 GCTCATGATTTAACACCTTCGGCATTTTGGCCCC
1 GCTCATGGTGTAACACCTTTGGCATTTTGGCCCC
6575 TGATTGAGCT
Statistics
Matches: 329, Mismatches: 39, Indels: 106
0.69 0.08 0.22
Matches are distributed among these distances:
34 14 0.04
35 2 0.01
36 4 0.01
38 121 0.37
39 11 0.03
40 7 0.02
42 5 0.02
43 4 0.01
44 6 0.02
45 4 0.01
46 7 0.02
47 40 0.12
48 99 0.30
49 1 0.00
50 1 0.00
51 2 0.01
52 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (38 bp):
GCTCATGGTGTAACACCTTTGGCATTTTGGCCCCCGAC
Found at i:6192 original size:48 final size:47
Alignment explanation
Indices: 6140--6529 Score: 191
Period size: 48 Copynumber: 8.9 Consensus size: 47
6130 AACTTTGGCA
6140 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTAGGCCAT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTA-GCCAT
* * ** *
6188 TTTTGGCCCTCGATGCTCATGGTGTAACACC-TACGCATTTTGGCCAT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCA-TTTAGCCAT
* * *
6235 TTTTTGCCCCCGACGCTCATGATGTAACACC--T---A--T-GTCA-
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTAGCCAT
* * *
6273 TTTTGACCCCCGACGCTCATGGTGGTTA-ACCTTTGGTATTTTAGCCAT
1 TTTTGGCCCCCGACGCTCATGGT-GTAACACCTTTGGCA-TTTAGCCAT
* * * *
6321 TTTTTGCGCCCGACGCTCATGATGTAACACC--T---A--T-GTCA-
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTAGCCAT
* * ** * * *** *
6359 TTTT--CCCGACG-CTCATGGTGGT-TAAC-CTTTGGCATTTTGGCCAT
1 TTTTGGCCC-CCGACGC-TCATGGTGTAACACCTTTGGCATTTAGCCAT
* * *
6403 TTTTTGCCCCCGACGCTCATGATGTAACACC--T---A--T-GTCA-
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTAGCCAT
*
6441 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCCAT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCA-TTTAGCCAT
* * *
6489 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTT
6530 TGGCCCCCAA
Statistics
Matches: 256, Mismatches: 47, Indels: 79
0.67 0.12 0.21
Matches are distributed among these distances:
35 1 0.00
36 8 0.03
37 6 0.02
38 56 0.22
39 12 0.05
40 5 0.02
42 1 0.00
43 7 0.03
44 4 0.02
45 6 0.02
46 12 0.05
47 49 0.19
48 89 0.35
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.34
Consensus pattern (47 bp):
TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTAGCCAT
Found at i:6233 original size:47 final size:47
Alignment explanation
Indices: 6133--6277 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
6123 GTGTAACAAC
**
6133 TTTGG-CA-TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCAT
1 TTTGGCCATTTTTGGCCCCCGACGCTCATGGTGTAACACC-TACGCAT
* * *
6179 TTAGGCCATTTTTGGCCCTCGATGCTCATGGTGTAACACCTACGCAT
1 TTTGGCCATTTTTGGCCCCCGACGCTCATGGTGTAACACCTACGCAT
* * *
6226 TTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCAT
1 TTTGGCCATTTTTGGCCCCCGACGCTCATGGTGTAACACCTACG-CAT
6274 TTTG
1 TTTG
6278 ACCCCCGACG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 4 0.05
47 45 0.53
48 36 0.42
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (47 bp):
TTTGGCCATTTTTGGCCCCCGACGCTCATGGTGTAACACCTACGCAT
Found at i:6275 original size:86 final size:85
Alignment explanation
Indices: 6188--6572 Score: 548
Period size: 86 Copynumber: 4.5 Consensus size: 85
6178 TTTAGGCCAT
* * **
6188 TTTTGGCCCTCGATGCTCATGGTGTAACACCTACGCATTTTGGCCATTTTTTGCCCCCGACGCTC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTGGCATTTTGGCCATTTTTTGCCCCCGACGCTC
6253 ATGATGTAACACCTATGTCA
66 ATGATGTAACACCTATGTCA
* * * * *
6273 TTTTGACCCCCGACGCTCATGGTGGTTAAC-CTTTGGTATTTTAGCCATTTTTTGCGCCCGACGC
1 TTTTGGCCCCCGACGCTCATGGT-G-TAACACCTTGGCATTTTGGCCATTTTTTGCCCCCGACGC
6337 TCATGATGTAACACCTATGTCA
64 TCATGATGTAACACCTATGTCA
*
6359 TTTT----CCCGACGCTCATGGTGGTTAAC-CTTTGGCATTTTGGCCATTTTTTGCCCCCGACGC
1 TTTTGGCCCCCGACGCTCATGGT-G-TAACACCTTGGCATTTTGGCCATTTTTTGCCCCCGACGC
6419 TCATGATGTAACACCTATGTCA
64 TCATGATGTAACACCTATGTCA
6441 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCCATTTTTTGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACC-TTGGCATTTTGGCCATTTTTTGCCCCCGACGCT
*
6506 CATGATGTAACACCTATGGCA
65 CATGATGTAACACCTATGTCA
* * *
6527 TTTTGGCCCCCAACGCTCATGATTTAACACCTTCGGCATTTTGGCC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTT-GGCATTTTGGCC
6573 CCTGATTGAG
Statistics
Matches: 274, Mismatches: 17, Indels: 17
0.89 0.06 0.06
Matches are distributed among these distances:
82 79 0.29
84 4 0.01
85 24 0.09
86 163 0.59
87 4 0.01
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (85 bp):
TTTTGGCCCCCGACGCTCATGGTGTAACACCTTGGCATTTTGGCCATTTTTTGCCCCCGACGCTC
ATGATGTAACACCTATGTCA
Found at i:6415 original size:168 final size:168
Alignment explanation
Indices: 6222--6530 Score: 548
Period size: 168 Copynumber: 1.8 Consensus size: 168
6212 TAACACCTAC
6222 GCATTTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTTGACCCCCGAC
1 GCATTTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTTGACCCCCGAC
* * *
6287 GCTCATGGTGGTTA-ACCTTTGGTATTTTAGCCATTTTTTGCGCCCGACGCTCATGATGTAACAC
66 GCTCATGGT-GTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACAC
*
6351 CTATGTCATTTTCCCGACGCTCATGGTGGTTAACCTTTG
130 CTATGGCATTTTCCCGACGCTCATGGTGGTTAACCTTTG
*
6390 GCATTTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTTGGCCCCCGAC
1 GCATTTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTTGACCCCCGAC
*
6455 GCTCATGGTGTAACACCTTTGGCATTTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACC
66 GCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACC
6520 TATGGCATTTT
131 TATGGCATTTT
6531 GGCCCCCAAC
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
167 3 0.02
168 131 0.98
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (168 bp):
GCATTTTGGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTTGACCCCCGAC
GCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACC
TATGGCATTTTCCCGACGCTCATGGTGGTTAACCTTTG
Found at i:7451 original size:11 final size:11
Alignment explanation
Indices: 7435--7460 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7425 GTTTTAGATC
7435 TTTTCTTCTAG
1 TTTTCTTCTAG
7446 TTTTCTTCTAG
1 TTTTCTTCTAG
7457 TTTT
1 TTTT
7461 TTAGGCAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTCTTCTAG
Found at i:7983 original size:38 final size:38
Alignment explanation
Indices: 7940--8055 Score: 135
Period size: 38 Copynumber: 3.1 Consensus size: 38
7930 TCATTTTATT
* *
7940 CCCCCGACACTCATGATGTAATACTTATGGCATTTTGG
1 CCCCCGACACTAATGATGTAACACTTATGGCATTTTGG
* *
7978 CCCCCGACACTAATGATGTAACACCTATGGCATTTTGT
1 CCCCCGACACTAATGATGTAACACTTATGGCATTTTGG
* * * * *
8016 CTCCCGACGCTTATGGTGTAACACCTT-TGGAATTTTGG
1 CCCCCGACACTAATGATGTAACA-CTTATGGCATTTTGG
8054 CC
1 CC
8056 ATTTTTAGCC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 63 0.97
39 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (38 bp):
CCCCCGACACTAATGATGTAACACTTATGGCATTTTGG
Found at i:8289 original size:133 final size:134
Alignment explanation
Indices: 7971--8318 Score: 459
Period size: 133 Copynumber: 2.6 Consensus size: 134
7961 TACTTATGGC
* * * * *
7971 ATTTTGGCCCCCGACACTAATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTTATGGTGTA
1 ATTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGACACCCGACGCTCATGGTGTA
* *
8036 ACACCTTTGGAATTTTGGCCATTTTTAGCCCCCGACGCTCATGGTGATTAACCTTTGGCATTTTA
66 ACACCTTTGAAATTTTGGCCATTTTTAGCCCCCGACGCTCATGCTGATTAACCTTTGGCATTTTA
8101 GCCA
131 GCCA
* * * * * * * *
8105 TTTTTTGCCCCCGACGCTCAA-GATGTAACACCTACGACATTATGGCCCCCGACACTCATGGTTT
1 ATTTTTGCCCCCGACGCT-AATGATGTAACACCTATGGCATTTTGACACCCGACGCTCATGGTGT
* * *
8169 AACACCTTT-AACATTTTGGCCATTTTT-GGCCCCGACGCTCATGCTGCTTAAGCTTTGGCATTT
65 AACACCTTTGAA-ATTTTGGCCATTTTTAGCCCCCGACGCTCATGCTGATTAACCTTTGGCATTT
8232 TAGCCA
129 TAGCCA
* *
8238 ATTTTTGCCCCCGACGCTAATGATGTAACACTTATGGCCTTTTGACACCCGACGCTCATGGTGTA
1 ATTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGACACCCGACGCTCATGGTGTA
* *
8303 ACACCTATGGAATTTT
66 ACACCTTTGAAATTTT
8319 TTGCCCCCGA
Statistics
Matches: 182, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
132 2 0.01
133 103 0.57
134 75 0.41
135 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (134 bp):
ATTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGACACCCGACGCTCATGGTGTA
ACACCTTTGAAATTTTGGCCATTTTTAGCCCCCGACGCTCATGCTGATTAACCTTTGGCATTTTA
GCCA
Found at i:8290 original size:38 final size:38
Alignment explanation
Indices: 8238--10553 Score: 328
Period size: 38 Copynumber: 54.2 Consensus size: 38
8228 ATTTTAGCCA
* *
8238 ATTTTTGCCCCCGACGCTAATGATGTAACACTTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* * * * * *
8276 CTTTTGACACCCGACGCTCATGGTGTAACACCTATGGA
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
8314 ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGC
1 A-TTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
*
8353 ATTTTGG-CCCCGACGCTCATGGTGTAACACATTTGGCATTTGGGCC
1 ATTTTGGCCCCCGACGCTCATGATGTAACAC--TT---A--T-GG-C
** *
8399 ATTTTTTCCCCCGACGCTCATTATGTAACACTTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
8437 ATTTTGGCCCCCGACGCTCATGATGTAAAACCTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* * * *
8475 ATTTTGTCTCCCGACGCTCATGGA-GTAACTCCTTTGGCGTTTTGGTC
1 ATTTTGGCCCCCGACGCTCAT-GATGTAA---C----AC-TTATGG-C
* * *
8522 ATTTTTGGCCCCCGACACTCATGGTGGTTAAC-CTTTGGCAATTTAGCC
1 A-TTTTGGCCCCCGACGCTCATGAT-G-TAACAC-TT----A--T-GGC
* * * * * *
8570 ATTTTTTGACCCCGACGCTCATTATGTAACACATACGAC
1 A-TTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
8609 ATTTTAGCCCCCGACGCTCATGGTGTAACACGTTTAGCATTTTGGCC
1 ATTTTGGCCCCCGACGCTCATGATGTAACAC--TT---A---TGG-C
*
8656 AGTTTTGGCCCCCGACGCTCATGCTGGTTAAC-CTT-TGGC
1 A-TTTTGGCCCCCGACGCTCATGAT-G-TAACACTTATGGC
* * *
8695 ATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGAC
1 ATTTT-G---------GCCCCCGACGCTCATGATGTAACACTTATGGC
* *
8743 ATTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTTGGC
1 ATTTTGGCCCCCGACGCTCATGATG-TA-ACACTT---A---TGGC
* * * * * *
8789 TATTTTTTGCTCCCGACGCTCATTATATAACACCTATGCC
1 -A-TTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
8829 ATTTTGG-CACCGACGCTCATGGTGTAACATCTTTAGCATTTTGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-C-TT---A---TGGC
* * *
8874 AAGTTTTGGCCCCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGCC
1 -A-TTTTGGCCCCCGACGCTCATGAT-G-TAA-C---A-C-TTAT-GGC
** * * *
8923 ATTCTTTACCCCCAACGCAT-ATGATGTAACACCTATGGT
1 ATT-TTGGCCCCCGACGC-TCATGATGTAACACTTATGGC
*
8962 ATTTTGGCCCCCGACGCTCATGGTGTAACACCTTTAGCATTTAGGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-C-TT---A--T--GGC
** * * * *
9009 ATTTTTTCCCCCGACGCTAATTATGTAAAACCTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* * **
9047 ATTTTGGCCCCCGACGCTCATGATATAACACCTATGAT
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* ** * * * *
9085 ATTTTAGTTCCTGACGCTCATGATTTTACACATTCGACATTTTAGCC
1 ATTTTGGCCCCCGACGCTCATGA-TGT--A-A--C-AC-TTAT-GGC
* * * * *
9132 ATTTTTTGCCCCTGACACCCATGGTGGTTAAC-CTT-TGGC
1 A-TTTTGGCCCCCGACGCTCATGAT-G-TAACACTTATGGC
** * *
9171 ATTTTAGCCATTTTTTGCCCCCGACGCTGTTGATGTAACACCTATGTC
1 ATTTT-G---------GCCCCCGACGCTCATGATGTAACACTTATGGC
* *
9219 ATTTTTG-CCCCGACGCTTATGGA-GTAACACCTT-TGGC
1 ATTTTGGCCCCCGACGCTCAT-GATGTAACA-CTTATGGC
* * * *
9256 ATTTTAGCCATTTTTTGCCTTCGACGCTCATTATGTAACACCTACGGC
1 ATTTTGGCC--------CC--CGACGCTCATGATGTAACACTTATGGC
* * *
9304 ATTTTTAGCCCCCGACGCTAATGATGTAACACATATGGC
1 A-TTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
9343 ATTTTGGCACCCGACGCTCAGGATGTAACACCTT-TGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTTATGGC
* * *
9381 ATTTTGGCTATTTTTTGCTCCCGACGCTCATTATGTAACACCTATGCC
1 ATTTTGGC---------C-CCCGACGCTCATGATGTAACACTTATGGC
* *
9429 ATTTTGG-CACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-C-TT---A---TGGC
* * *
9474 AAGTTTTGACACCCGACGCTCATGCTAGTTAAC-CTT-TGGC
1 -A-TTTTGGCCCCCGACGCTCATGAT-G-TAACACTTATGGC
* * *
9514 ATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGT
1 ATTTT-G---------GCCCCCGACGCTCATGATGTAACACTTATGGC
* * *
9562 ATTTTGGCCCCCGATGCTCAAGGTGTAACACCTT-TGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTTATGGC
* * *
9600 ATTTTGGCCATTTTTTGTCCCCGGCGCTCATTATGTAACACCTATGGC
1 ATTTTGG-C---------CCCCGACGCTCATGATGTAACACTTATGGC
* *
9648 ATTTTGGCCCCCGACGCTCATGGTGTAACACCTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
9686 ATTTTGACCCCCGACGCTCATGATTTAACACCTTCGACATTTTGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTT----A---TGGC
** * * *
9732 AATTTTTTCCCCCGACGCTTATGATGTAACACCTATGGT
1 -ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* *
9771 ATTTTGGCCCCCGACGCTTATGGTGTAACACCTT-TGGCATTTTAACC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTTATGG---------C
* * *
9818 ATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGC
1 A-TTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* ** * * *
9857 ATTTTAGCTTCCAACACTCATGGTGTAACACCTTTAGCATTTTGGCC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-C-TT---A---TGG-C
*
9904 AGTTTTGGCCCCCGACGCTCATGCTGGTTAAC-CTT-TGGC
1 A-TTTTGGCCCCCGACGCTCATGAT-G-TAACACTTATGGC
* * *
9943 ATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAAAACCTATGGC
1 ATTTT-G---------GCCCCCGACGCTCATGATGTAACACTTATGGC
*
9991 ATTTTGGCACCCGACGCTCATGATGTAACACCTT-TGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTTATGGC
* *
10029 ATTTTGGCTATTTCTTGCTCTCGACGCTCATTATGTAACACCTATGGC
1 ATTTTGGC-----C---C-C-CGACGCTCATGATGTAACACTTATGGC
* * * *
10077 ATTTTGG-CACCAACGCTCATGGTGTAACACCTTTAGAATTTTGACC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-C-TT---A---TG-GC
* *
10123 AGTTTTGACCCCCGACGCTCATGCTAGTTAAC-CTT-TGGC
1 A-TTTTGGCCCCCGACGCTCATGAT-G-TAACACTTATGGC
* *
10162 ATTTTCGCCACTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGC
1 ATTTT-G---------GCCCCCGACGCTCATGATGTAACACTTATGGC
* *
10210 ATTTTGGGACCCC-ACGCTCATGATATAACACCTTTGGCATTTTGGCC
1 ATTTT-GGCCCCCGACGCTCATGATGTAACA-C-TT---A---TGG-C
* * * *
10257 ATTTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGA
1 A--TTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* ** * *
10297 ATTTTGGCACTTGACGCTCATGATGTAAAACCTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* ** ** * *
10335 ATTTTAGTTCTTGACGCTCATGATTTAACACCTTCGGCATTTTAGCC
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTT----A---T-GGC
* * * *
10382 ATTTTTTGCCCCCGAGGCTTATGATGTATCACCTTTGACATTTTGGTC
1 A-TTTTGGCCCCCGACGCTCATGATGTA--A-C----AC-TTATGG-C
** * *
10430 ATTTTATTCCCCCGACACTCATGATGTAATACTTATGGC
1 ATTTT-GGCCCCCGACGCTCATGATGTAACACTTATGGC
* * *
10469 ATTTTGGCCCCCGACACTAATGATGTAACACCTATGGC
1 ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
* * * * *
10507 ATTTTGTCTCCCGACGCTTATGGTGTAACACCTT-TGGA
1 ATTTTGGCCCCCGACGCTCATGATGTAACA-CTTATGGC
10545 ATTTTGGCC
1 ATTTTGGCC
10554 ATTTTTAGCC
Statistics
Matches: 1665, Mismatches: 312, Indels: 602
0.65 0.12 0.23
Matches are distributed among these distances:
37 99 0.06
38 584 0.35
39 124 0.07
40 34 0.02
41 11 0.01
42 15 0.01
43 8 0.00
44 4 0.00
45 18 0.01
46 69 0.04
47 160 0.10
48 467 0.28
49 39 0.02
50 23 0.01
51 2 0.00
54 5 0.00
55 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (38 bp):
ATTTTGGCCCCCGACGCTCATGATGTAACACTTATGGC
Found at i:8327 original size:172 final size:168
Alignment explanation
Indices: 8107--8639 Score: 536
Period size: 172 Copynumber: 3.2 Consensus size: 168
8097 TTTAGCCATT
* * * * * *
8107 TTTTG-CCCCCGACGCTCAAGATGTAACACCTA-CGACA-TTATGGCCCCCGACACTCATGGTTT
1 TTTTGACCCCCGACGCTCATGATGTAACACCTATGGA-ATTTTTTGCCCCCGACGCTCATGGTGT
* *
8169 AACACCTTTAACATTTTGGCCATTTTTGGCCCCGACGCTCATGCTGCTTAAGCTTTGGCATTTTA
65 AACACCTTT--CATTTTGG-CATTTTTGGCCCCGACGCTCATGGTG-TTAAACTTTGGCATTTTA
* * *
8234 GCCAATTTTTGCCCCCGACGCTAATGATGTAACACTTATGGCC
126 GCCAATTTTTGCCCCCGACGCTCATTATGTAACACTTATGGCA
* * **
8277 TTTTGACACCCGACGCTCATGGTGTAACACCTATGGAATTTTTTGCCCCCGACGCTCATAATGTA
1 TTTTGACCCCCGACGCTCATGATGTAACACCTATGGAATTTTTTGCCCCCGACGCTCATGGTGTA
**
8342 ACA-C-TT-A---TGGCA-TTTTGGCCCCGACGCTCATGGTG-TAACACATTTGGCATTTGGGCC
66 ACACCTTTCATTTTGGCATTTTTGGCCCCGACGCTCATGGTGTTAA-AC-TTTGGCATTTTAGCC
*
8399 -ATTTTTTCCCCCGACGCTCATTATGTAACACTTATGGCA
129 AATTTTTGCCCCCGACGCTCATTATGTAACACTTATGGCA
* * * * * *
8438 TTTTGGCCCCCGACGCTCATGATGTAAAACCTATGGCATTTTGT-CTCCCGACGCTCATGGAGTA
1 TTTTGACCCCCGACGCTCATGATGTAACACCTATGGAATTTTTTGCCCCCGACGCTCATGGTGTA
* * * * *
8502 ACTCCTTTGGCGTTTTGGTCATTTTTGGCCCCCGACACTCATGGTGGTTAACCTTTGGCAATTTA
66 ACACCTTT--CATTTTGG-CATTTTTGG-CCCCGACGCTCATGGT-GTTAAACTTTGGCATTTTA
* * * * *
8567 GCCATTTTTTGACCCCGACGCTCATTATGTAACACATACGACA
126 GCCAATTTTTGCCCCCGACGCTCATTATGTAACACTTATGGCA
*
8610 TTTT-AGCCCCCGACGCTCATGGTGTAACAC
1 TTTTGA-CCCCCGACGCTCATGATGTAACAC
8640 GTTTAGCATT
Statistics
Matches: 299, Mismatches: 44, Indels: 38
0.78 0.12 0.10
Matches are distributed among these distances:
160 21 0.07
161 75 0.25
162 37 0.12
163 2 0.01
164 3 0.01
167 1 0.00
168 3 0.01
169 2 0.01
170 13 0.04
171 53 0.18
172 86 0.29
173 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (168 bp):
TTTTGACCCCCGACGCTCATGATGTAACACCTATGGAATTTTTTGCCCCCGACGCTCATGGTGTA
ACACCTTTCATTTTGGCATTTTTGGCCCCGACGCTCATGGTGTTAAACTTTGGCATTTTAGCCAA
TTTTTGCCCCCGACGCTCATTATGTAACACTTATGGCA
Found at i:8412 original size:84 final size:86
Alignment explanation
Indices: 8314--8478 Score: 271
Period size: 84 Copynumber: 1.9 Consensus size: 86
8304 CACCTATGGA
*
8314 ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGCATTTTGG-CCCCGACGCTCATGGTGT
1 ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGCATTTTGGCCCCCGACGCTCATGATGT
* *
8378 AACACATTTGGCATTTGGGCC
66 AAAACATATGGCATTTGGGCC
*
8399 ATTTTTT-CCCCCGACGCTCATTATGTAACACTTATGGCATTTTGGCCCCCGACGCTCATGATGT
1 ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGCATTTTGGCCCCCGACGCTCATGATGT
*
8463 AAAACCTATGGCATTT
66 AAAACATATGGCATTT
8479 TGTCTCCCGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
84 37 0.50
85 37 0.50
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (86 bp):
ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGCATTTTGGCCCCCGACGCTCATGATGT
AAAACATATGGCATTTGGGCC
Found at i:8756 original size:86 final size:86
Alignment explanation
Indices: 8658--8893 Score: 262
Period size: 86 Copynumber: 2.8 Consensus size: 86
8648 TTTTGGCCAG
* * *
8658 TTTTGGCCCCCGACGCTCATGCTGGTTA-ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGC
1 TTTTGGCACCCGACGCTCATGAT-GTTACACCCTTGGCATTTTAGCCATTCTTTGCCCCCGACGC
*
8722 TAATGATGTAACACCTATGACA
65 TAATGATATAACACCTATGACA
* * * *
8744 TTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTTGGCTATTTTTTGCTCCCGACGCT
1 TTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTTAGCCATTCTTTGCCCCCGACGCT
* * *
8809 CATTATATAACACCTATGCCA
66 AATGATATAACACCTATGACA
* * * * * * * *
8830 TTTTGGCA-CCGACGCTCATGGTGTAACATCTTTAGCATTTTGGCAAGTT-TTGGCCCCCGACGC
1 TTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTTAGCCA-TTCTTTGCCCCCGACGC
8893 T
65 T
8894 CATGCTAGTT
Statistics
Matches: 129, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
85 49 0.38
86 80 0.62
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (86 bp):
TTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTTAGCCATTCTTTGCCCCCGACGCT
AATGATATAACACCTATGACA
Found at i:8833 original size:134 final size:134
Alignment explanation
Indices: 8443--8811 Score: 463
Period size: 134 Copynumber: 2.8 Consensus size: 134
8433 TGGCATTTTG
* * * * *
8443 GCCCCCGACGCTCATGATGTAAAACCTATGGCATTTTGTCTCCCGACGCTCATGGA-GTAACTCC
1 GCCCCCGACGCTCATGATGTAACACCTATGACATTTTGGCACCCGACGCTCAT-GATGTAACACC
* * * *
8507 TTTGGCGTTTTGG-TCATTTTTGGCCCCCGACACTCATGGTGGTTAACCTTTGGCAATTTAGCCA
65 TTTGGCATTTTGGCT-ATTTTTGGCCCCCGACGCTCATGATGGTTAACCTTTGGCATTTTAGCCA
*
8571 TTTTTT
129 TTCTTT
* * * * * * * *
8577 GACCCCGACGCTCATTATGTAACACATACGACATTTTAGCCCCCGACGCTCATGGTGTAACACGT
1 GCCCCCGACGCTCATGATGTAACACCTATGACATTTTGGCACCCGACGCTCATGATGTAACACCT
* * * *
8642 TTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTGGTTAACCTTTGGCATTTTAGCCATT
66 TTGGCATTTTGGCTATTTTTGGCCCCCGACGCTCATGATGGTTAACCTTTGGCATTTTAGCCATT
8707 CTTT
131 CTTT
* * *
8711 GCCCCCGACGCTAATGATGTAACACCTATGACATTTTGGCACCCGACGCTCATGATGTTACACCC
1 GCCCCCGACGCTCATGATGTAACACCTATGACATTTTGGCACCCGACGCTCATGATGTAACACCT
* *
8776 TTGGCATTTTGGCTATTTTTTGCTCCCGACGCTCAT
66 TTGGCATTTTGGCTATTTTTGGCCCCCGACGCTCAT
8812 TATATAACAC
Statistics
Matches: 197, Mismatches: 36, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
133 1 0.01
134 196 0.99
ACGTcount: A:0.19, C:0.29, G:0.20, T:0.32
Consensus pattern (134 bp):
GCCCCCGACGCTCATGATGTAACACCTATGACATTTTGGCACCCGACGCTCATGATGTAACACCT
TTGGCATTTTGGCTATTTTTGGCCCCCGACGCTCATGATGGTTAACCTTTGGCATTTTAGCCATT
CTTT
Found at i:8857 original size:37 final size:37
Alignment explanation
Indices: 8801--8874 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
8791 TTTTTTGCTC
*
8801 CCGACGCTCATTATATAACACCTAT-GCCATTTTGGCA
1 CCGACGCTCATGATATAACACCTATAG-CATTTTGGCA
* * * *
8838 CCGACGCTCATGGTGTAACATCTTTAGCATTTTGGCA
1 CCGACGCTCATGATATAACACCTATAGCATTTTGGCA
8875 AGTTTTGGCC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 30 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (37 bp):
CCGACGCTCATGATATAACACCTATAGCATTTTGGCA
Found at i:8898 original size:219 final size:217
Alignment explanation
Indices: 8524--9077 Score: 745
Period size: 219 Copynumber: 2.5 Consensus size: 217
8514 TTTTGGTCAT
* * *
8524 TTTTGGCCCCCGACACTCATGGTGGTTA-ACCTTTGGCAATTTAGCCATTTTTTGACCCCGACGC
1 TTTTGGCCCCCGACGCTCATGGT-GTTACACCTTTGGC-ATTTTGGCATTTTTTG-CCCCGACGC
* * *
8588 TCATTATGTAACACATACGACATTTTAGCCCCCGACGCTCATGGTGTAACACGTTTAGCATTTTG
63 TCATTATGTAACACCTATGACATTTT-GGCCCCGACGCTCATGGTGTAACACGTTTAGCATTTTG
* * * * *
8653 GCCAGTTTTGGCCCCCGACGCTCATGCTGGTTAACCTTTGGCATTTTAGCCATTCTTTGCCCCCG
127 GCAAGTTTTGGCCCCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGCCATTCTTTACCCCCA
8718 ACGC-TAATGATGTAACACCTATGACA
192 ACGCAT-ATGATGTAACACCTATGACA
* * *
8744 TTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTTGGCTATTTTTTGCTCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTTACACCTTTGGCATTTTGGC-ATTTTTTGC-CCCGACGCT
* * *
8809 CATTATATAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAACATC-TTTAGCATTTTGG
64 CATTATGTAACACCTATGACATTTTGGCCCCGACGCTCATGGTGTAACA-CGTTTAGCATTTTGG
8873 CAAGTTTTGGCCCCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGCCATTCTTTACCCCCAA
128 CAAGTTTTGGCCCCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGCCATTCTTTACCCCCAA
**
8938 CGCATATGATGTAACACCTATGGTA
193 CGCATATGATGTAACACCTATGACA
* * * * *
8963 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTAGCATTTAGGGCATTTTTTCCCCCGACGCTA
1 TTTTGGCCCCCGACGCTCATGGTGTTACACCTTTGGCATTT-TGGCATTTTTTGCCCCGACGCTC
* * * *
9028 ATTATGTAAAACCTATGGCATTTTGGCCCCCGACGCTCATGATATAACAC
65 ATTATGTAACACCTATGACATTTTGG-CCCCGACGCTCATGGTGTAACAC
9078 CTATGATATT
Statistics
Matches: 294, Mismatches: 33, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
218 33 0.11
219 190 0.65
220 71 0.24
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.32
Consensus pattern (217 bp):
TTTTGGCCCCCGACGCTCATGGTGTTACACCTTTGGCATTTTGGCATTTTTTGCCCCGACGCTCA
TTATGTAACACCTATGACATTTTGGCCCCGACGCTCATGGTGTAACACGTTTAGCATTTTGGCAA
GTTTTGGCCCCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGCCATTCTTTACCCCCAACGC
ATATGATGTAACACCTATGACA
Found at i:9056 original size:85 final size:86
Alignment explanation
Indices: 8877--9079 Score: 261
Period size: 85 Copynumber: 2.4 Consensus size: 86
8867 TTTTGGCAAG
* *
8877 TTTTGGCCCCCGACGCTCATGCTAGTTA-ACCTTTAGCATTTTAGCCATTCTTTACCCCCAACGC
1 TTTTGGCCCCCGACGCTCATGAT-GTAACACCTTTAGCATTTTAGCCATTCTTTACCCCCAACGC
* *
8941 ATATGATGTAACACCTATGGTA
65 ATATGATGTAAAACCTATGGCA
* * * *
8963 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTAGCA-TTTAGGGCATT-TTTTCCCCCGACGC
1 TTTTGGCCCCCGACGCTCATGATGTAACACCTTTAGCATTTTA-GCCATTCTTTACCCCCAACGC
*
9026 -TAATTATGTAAAACCTATGGCA
65 AT-ATGATGTAAAACCTATGGCA
*
9048 TTTTGGCCCCCGACGCTCATGATATAACACCT
1 TTTTGGCCCCCGACGCTCATGATGTAACACCT
9080 ATGATATTTT
Statistics
Matches: 104, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
84 1 0.01
85 66 0.63
86 37 0.36
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.32
Consensus pattern (86 bp):
TTTTGGCCCCCGACGCTCATGATGTAACACCTTTAGCATTTTAGCCATTCTTTACCCCCAACGCA
TATGATGTAAAACCTATGGCA
Found at i:9281 original size:85 final size:87
Alignment explanation
Indices: 9162--9690 Score: 281
Period size: 86 Copynumber: 6.2 Consensus size: 87
9152 ATGGTGGTTA
* * *
9162 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCT-GTTGATGTAACACCTATGTCATTTTT-
1 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATT-ATGTAACACCTACGGCATTTTTA
*
9225 G-CCCCGACGCTTATGGA-GTAAC
65 GCCCCCGACGCTAAT-GATGTAAC
**
9247 ACCTTTGGCATTTTAGCCATTTTTTGCCTTCGACGCTCATTATGTAACACCTACGGCATTTTTAG
1 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATTATGTAACACCTACGGCATTTTTAG
9312 CCCCCGACGCTAATGATGTAAC
66 CCCCCGACGCTAATGATGTAAC
* * * ** *
9334 ACATATGGCATTTT-G---------GCACCCGACGCTCAGGATGTAACACCTTTGGCATTTTGGC
1 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATTATGTAACACC--T---A---CGGC
* * * *
9389 TATTTTTTGCTCCCGACGCTCATTATGTAAC
58 -ATTTTTAGCCCCCGACGCTAATGATGTAAC
* * **
9420 ACC--T---A---T-GCCA--TTTTGGCACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGC
1 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATTATGTAACACC--TA-C-----GGC
* * * * *
9474 AAGTTTT-GACACCCGACGCTCATGCTAGTTA-
58 -ATTTTTAG-CCCCCGACGCTAATGAT-GTAAC
* * * * *
9505 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGTA-TTTTGG
1 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATTATGTAACACCTACGGCATTTTTAG
* *
9569 CCCCCGATGCTCAA-GGTGTAAC
66 CCCCCGACGCT-AATGATGTAAC
* * * * *
9591 ACCTTTGGCATTTTGGCCATTTTTTGTCCCCGGCGCTCATTATGTAACACCTATGGCA-TTTTGG
1 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATTATGTAACACCTACGGCATTTTTAG
* *
9655 CCCCCGACGCTCATGGTGTAAC
66 CCCCCGACGCTAATGATGTAAC
*
9677 ACCTATGGCATTTT
1 ACCTTTGGCATTTT
9691 GACCCCCGAC
Statistics
Matches: 350, Mismatches: 52, Indels: 83
0.72 0.11 0.17
Matches are distributed among these distances:
77 21 0.06
78 2 0.01
79 1 0.00
81 1 0.00
82 2 0.01
84 2 0.01
85 111 0.32
86 141 0.40
87 33 0.09
88 2 0.01
90 1 0.00
93 1 0.00
94 6 0.02
96 26 0.07
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (87 bp):
ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATTATGTAACACCTACGGCATTTTTAG
CCCCCGACGCTAATGATGTAAC
Found at i:9418 original size:86 final size:85
Alignment explanation
Indices: 9301--10339 Score: 449
Period size: 86 Copynumber: 12.0 Consensus size: 85
9291 TAACACCTAC
* * *
9301 GGCATTTTTAGCCCCCGACGCTAATGATGTAACACATATGGCATTTTGGCACCCGACGCTCAGGA
1 GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCAGGA
9366 TGTAACACCTTTGGCATTTT
66 TGTAACACCTTTGGCATTTT
* * *
9386 GGCTATTTTTTGCTCCCGACGCTCATTATGTAACACCTATGCCATTTTGGCA-CCGACGCTCATG
1 GGC-ATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCA-G
*
9450 G-TGTAACACCTTTAGCATTTT
64 GATGTAACACCTTTGGCATTTT
** * * * * *
9471 GGCAAGTTTTGACACCCGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTTTTTGCCCC
1 GGCATTTTTTG-CCCCCGACGCTCATGAT-GTAACACCTATGGCATTTT-G---------GCACC
* *
9535 CGACGCTAATGATGTAACACC--T---A---T
54 CGACGCTCAGGATGTAACACCTTTGGCATTTT
* * * * * *
9559 GGTA-TTTTGGCCCCCGATGCTCAAGGTGTAACACCTTTGGCATTTTGGCCATTTTTTGTCCCCG
1 GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGG-CA---------CCCG
* **
9623 GCGCTCATTATGTAACACC--T---A---T
56 ACGCTCAGGATGTAACACCTTTGGCATTTT
* * * * *
9645 GGCA-TTTTGGCCCCCGACGCTCATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCATGA
1 GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCAGGA
* * *
9709 TTTAACACCTTCGACATTTT
66 TGTAACACCTTTGGCATTTT
* * * *
9729 GGCAATTTTTT-CCCCCGACGCTTATGATGTAACACCTATGGTATTTTGGCCCCCGACGCTTATG
1 GGC-ATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCA-G
9793 G-TGTAACACCTTTGGCATTTT
64 GATGTAACACCTTTGGCATTTT
** * * ** * *
9814 AACCATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGCATTTTAGCTTCCAACACTCATG
1 -GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCA-G
*
9879 G-TGTAACACCTTTAGCATTTT
64 GATGTAACACCTTTGGCATTTT
* * * * * *
9900 GGCCAGTTTTGGCCCCCGACGCTCATGCTGGTTA-ACCTTTGGCATTTTAGCCATTCTTTGCCCC
1 GG-CATTTTTTGCCCCCGACGCTCATGAT-GTAACACCTATGGCATTTT-G---------GCACC
* * * *
9964 CGACGCTAATGATGTAAAACCTATGGCATTTT
54 CGACGCTCAGGATGTAACACCTTTGGCATTTT
*
9996 GGCA---------CCCGACGCTCATGATGTAACACCTTTGGCATTTTGGCTATTTCTTGCTCTCG
1 GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGC-A-------C-C-CG
** *
10052 ACGCTCATTATGTAACACCTATGGCATTTT
56 ACGCTCAGGATGTAACACCTTTGGCATTTT
* * * * *
10082 GGCA----------CCAACGCTCATGGTGTAACACCTTTAGAATTTTGACCAGTTTTGACCCCCG
1 GGCATTTTTTGCCCCCGACGCTCATGATGTAACACC--T---A---TG-GCA-TTTTGGCACCCG
* * *
10137 ACGCTCATGCTAGTTA-ACCTTTGGCATTTT
56 ACGCTCAGGAT-GTAACACCTTTGGCATTTT
* * * * * *
10167 CGCCACTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGGGACCCCACGCTCATG
1 -GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCAGG
*
10232 ATATAACACCTTTGGCATTTT
65 ATGTAACACCTTTGGCATTTT
* * ** *
10253 GGCCATTTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGAATTTTGGCACTTGACGCTCAT
1 GG-CA-TTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCAG
* *
10318 GATGTAAAACCTATGGCATTTT
64 GATGTAACACCTTTGGCATTTT
10340 AGTTCTTGAC
Statistics
Matches: 747, Mismatches: 118, Indels: 176
0.72 0.11 0.17
Matches are distributed among these distances:
76 23 0.03
77 1 0.00
81 1 0.00
84 11 0.01
85 189 0.25
86 348 0.47
87 83 0.11
88 6 0.01
91 2 0.00
93 2 0.00
94 4 0.01
95 12 0.02
96 65 0.09
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (85 bp):
GGCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGGCACCCGACGCTCAGGA
TGTAACACCTTTGGCATTTT
Found at i:9442 original size:37 final size:37
Alignment explanation
Indices: 9401--9474 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
9391 TTTTTTGCTC
*
9401 CCGACGCTCATTATGTAACACCTAT-GCCATTTTGGCA
1 CCGACGCTCATGATGTAACACCTATAG-CATTTTGGCA
* *
9438 CCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCA
1 CCGACGCTCATGATGTAACACCTATAGCATTTTGGCA
9475 AGTTTTGACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (37 bp):
CCGACGCTCATGATGTAACACCTATAGCATTTTGGCA
Found at i:9527 original size:133 final size:130
Alignment explanation
Indices: 9227--10574 Score: 543
Period size: 134 Copynumber: 10.5 Consensus size: 130
9217 TCATTTTTGC
* *
9227 CCCGACGCTTATGGA-GTAACACCTTTGGCATTTTAGCCATTTTTTGCCTTCGACGCTCATTATG
1 CCCGACGCTCA-GGATGTAACACCTTTGGCATTTTAGCCATTTTTTGCC-CCGACGCTCATTATG
* * * * *
9291 TAACACCTACGGCATTTTTAGCCCCCGACGCTAATGATGT-A-A-C---A-CA-TATGGCATTTT
64 TAACACCTATGGCA-TTTT-GGCCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCATTTT
*
9348 GGCA
127 GACA
* *
9352 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTGGCTATTTTTTGCTCCCGACGCTCATTATGT
1 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTTTTGC-CCCGACGCTCATTATGT
* *
9417 AACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTG
65 AACACCTATGGCATTTTGGCCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGC-A-TTTTG
9482 ACA
128 ACA
* * * * *
9485 CCCGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATG
1 CCCGACGCTCAGGAT-GTAACACCTTTGGCATTTTAGCCATTTTTTG-CCCCGACGCTCATTATG
* * * *
9549 TAACACCTATGGTATTTTGGCCCCCGATGCTCAAGGTGTAACACCTTTGGCATTTTGGCCATTTT
64 TAACACCTATGGCATTTTGG-CCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGG-CA--TT
*
9614 TTGTC-
125 TTGACA
* ** * * **
9619 CCCGGCGCTCATTATGTAACACCTATGGCATTTT-GGC--------CCCCGACGCTCATGGTGTA
1 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCGACGCTCATTATGTA
* * * * *
9675 ACACCTATGGCATTTTGACCCCCGACGCTCATGATTTAACACC-TTCGACATTTTGGCAATTTTT
66 ACACCTATGGCATTTTG-GCCCCGACGCTCATGGTGTAACACCTTTAG-CATTTTGGC-ATTTTG
* *
9739 TCC
128 ACA
* * * * * * **
9742 CCCGACGCTTATGATGTAACACCTATGGTATTTT-GGC--------CCCCGACGCTTATGGTGTA
1 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCGACGCTCATTATGTA
* * *
9798 ACACCTTTGGCATTTTAACCATTTTTTGCCCCCGACGCTCATGATGTAACACC--TA-C-----G
66 ACACCTATGG---------CA--TTTTGGCCCCGACGCTCATGGTGTAACACCTTTAGCATTTTG
*
9855 GCATTTT-AGCT
120 GCATTTTGA-CA
* * * * * * * **
9866 TCCAACACTCATGG-TGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTG
1 CCCGACGCTCA-GGATGTAACACCTTTGGCATTTTAGCCATTTTTTG-CCCCGACGCTCATTAT-
* * * * *
9930 GTTA-ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAAAACC--T---A--
63 GTAACACCTATGGCATTTT-G---------G-CCCCGACGCTCATGGTGTAACACCTTTAGCATT
*
9987 -TGGCATTTTGGCA
117 TTGGCATTTTGACA
* * * * *
10000 CCCGACGCTCATGATGTAACACCTTTGGCATTTTGGCTATTTCTTGCTCTCGACGCTCATTATGT
1 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTTTTGC-CCCGACGCTCATTATGT
* * * *
10065 AACACCTATGGCATTTTGGCACCAACGCTCATGGTGTAACACCTTTAGAATTTTGACCAGTTTTG
65 AACACCTATGGCATTTTGGCCCCGACGCTCATGGTGTAACACCTTTAGCATTTTG-GCA-TTTTG
*
10130 ACC
128 ACA
* * * * * * *
10133 CCCGACGCTCATGCTAGTTA-ACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACGCTAATGATG
1 CCCGACGCTCAGGAT-GTAACACCTTTGGCATTTTAGCCATTTTTTG-CCCCGACGCTCATTATG
* * *
10197 TAACACCTATGGCATTTTGGGACCCC-ACGCTCATGATATAACACCTTTGGCATTTTGGCCATTT
64 TAACACCTATGGCATTTT-GG-CCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGG-CA---
*
10261 TTTTG-CC
123 TTTTGACA
* * * * * * *
10268 CCCGACGCTAATGATGTAACACCTATGGAATTTT-GGCA---CTT-----GACGCTCATGATGTA
1 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCGACGCTCATTATGTA
* ** ** * * ** *
10324 AAACCTATGGCATTTTAGTTCTTGACGCTCATGATTTAACACCTTCGGCATTTTAGCCATTTTTT
66 ACACCTATGGCATTTT-GGCCCCGACGCTCATGGTGTAACACCTTTAGCATTTT-GGCA--TTTT
*
10389 G-CC
127 GACA
* * * * * * * * * *
10392 CCCGAGGCTTATGATGTATCACCTTTGACATTTTGGTCATTTTATTCCCCCGACACTCATGATGT
1 CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTT-TTGCCCCGACGCTCATTATGT
* * * * * *
10457 AATACTTATGGCATTTTGGCCCCCGACACTAATGATGTAACACC--T---A---TGGCATTTTGT
65 AACACCTATGGCATTTTGG-CCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCATTTTGA
*
10514 CT
129 CA
* * * * *
10516 CCCGACGCTTATGG-TGTAACACCTTTGGAATTTTGGCCATTTTTAGCCCCGAAGCTCAT
1 CCCGACGCTCA-GGATGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCGACGCTCAT
10575 GGTGGTTAAC
Statistics
Matches: 971, Mismatches: 156, Indels: 194
0.74 0.12 0.15
Matches are distributed among these distances:
122 6 0.01
123 120 0.12
124 176 0.18
125 143 0.15
126 4 0.00
128 1 0.00
129 4 0.00
130 3 0.00
131 9 0.01
132 6 0.01
133 185 0.19
134 269 0.28
135 40 0.04
136 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (130 bp):
CCCGACGCTCAGGATGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCGACGCTCATTATGTA
ACACCTATGGCATTTTGGCCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCATTTTGACA
Found at i:9615 original size:219 final size:219
Alignment explanation
Indices: 9162--10703 Score: 1496
Period size: 219 Copynumber: 7.2 Consensus size: 219
9152 ATGGTGGTTA
* * ** * *
9162 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTGTTGATGTAACACCTATGTCATTTTTGC
1 ACCTTTGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGGC
* * * * * * **
9227 CCCGACGCTTATGGAGTAACACCTTTGGCATTTTAGCCATTTTTTG-CCTTCGACGCTCAT--TA
66 ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCA-GTTTTGACCCCCGACGCTCATGCTA
* * *
9289 -TGTAACAC-----C----TACGGCATTTTTAGCCCCCGACGCTAATGATGTAACACATATGGCA
130 GT-TAAC-CTTTGGCATTTTA-GCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCA
*
9344 TTTTGGCACCCGACGCTCA-GGATGTAAC
192 TTTTGGCCCCCGACGCTCATGG-TGTAAC
* * *
9372 ACCTTTGGCATTTTGGCTATTTTTTGCTCCCGACGCTCATTATGTAACACCTATGCCATTTTGGC
1 ACCTTTGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGGC
* *
9437 ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGACACCCGACGCTCATGCTAG
66 ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGACCCCCGACGCTCATGCTAG
*
9502 TTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGTATTTT
131 TTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTT
* *
9567 GGCCCCCGATGCTCAAGGTGTAAC
196 GGCCCCCGACGCTCATGGTGTAAC
* *
9591 ACCTTTGGCATTTTGGCCATTTTTTG-TCCCCGGCGCTCATTATGTAACACCTATGGCATTTTGG
1 ACCTTTGGCATTTTGGCCATTTTTTGCT-CCCGACGCTCATGATGTAACACCTATGGCATTTTGG
*
9655 CCCCCGACGCTCATGGTGTAACACC--T---A---TGG-CA-TTTTGACCCCCGACGCTCATG--
65 -CACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGACCCCCGACGCTCATGCT
* * * * * * *
9708 ATTTAACACCTTCGACATTTTGGCAATTTTTT-CCCCCGACGCTTATGATGTAACACCTATGGTA
129 AGTT-A-ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCA
*
9772 TTTTGGCCCCCGACGCTTATGGTGTAAC
192 TTTTGGCCCCCGACGCTCATGGTGTAAC
** * * *
9800 ACCTTTGGCATTTTAACCATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGCATTTTAGC
1 ACCTTTGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGGC
* * * * *
9865 TTCCAACACTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTG
66 -ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGACCCCCGACGCTCATGCTA
* *
9930 GTTAACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAAAACCTATGGCATTT
130 GTTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTT
* *
9995 TGGCACCCGACGCTCATGATGTAAC
195 TGGCCCCCGACGCTCATGGTGTAAC
* * * *
10020 ACCTTTGGCATTTTGGCTATTTCTTGCTCTCGACGCTCATTATGTAACACCTATGGCATTTTGGC
1 ACCTTTGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGGC
* * *
10085 ACCAACGCTCATGGTGTAACACCTTTAGAATTTTGACCAGTTTTGACCCCCGACGCTCATGCTAG
66 ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGACCCCCGACGCTCATGCTAG
* *
10150 TTAACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTT
131 TTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTT
* * *
10215 GGGACCCC-ACGCTCATGATATAAC
196 -GGCCCCCGACGCTCATGGTGTAAC
* * *
10239 ACCTTTGGCATTTTGGCCATTTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGAATTTTGG
1 ACCTTTGGCATTTTGGCCA-TTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGG
* * * * *
10304 CACTTGACGCTCATGATGTAAAACCTATGGCATTTT----AGTTCTT-------GACGCTCATG-
65 CAC-CGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTT-TTGACCCCCGACGCTCATGC
* * * * *
10357 -ATTTAACACCTTCGGCATTTTAGCCATTTTTTGCCCCCGAGGCTTATGATGTATCACCTTTGAC
128 TAGTT-A-ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACC--T---
** * * *
10421 ATTTTGGTCATTTTATTCCCCCGACACTCATGATGTAAT
186 A---TGG-CATTTT-GGCCCCCGACGCTCATGGTGTAAC
* * *
10460 A-CTTATGGCATTTTGG-C--------C-CCCGACACTAATGATGTAACACCTATGGCATTTTGT
1 ACCTT-TGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGG
* * * * * * * *
10514 CTCCCGACGCTTATGGTGTAACACCTTTGGAATTTTGGCCA-TTTTTAGCCCCGAAGCTCATGGT
65 C-ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGACCCCCGACGCTCATGCT
* * *
10578 GGTTAACCTTTGGCATTTTAGCCA-TTTTTG-CCCCGACGCTCAA-GATGTAACACCTACGACAT
129 AGTTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCT-AATGATGTAACACCTATGGCAT
* * *
10640 TATGG-CCCCGACACTCATGGTTTAAC
193 TTTGGCCCCCGACGCTCATGGTGTAAC
* *
10666 ACCTTTAGCA-TTTGGCCA-TTTTGGC-CCCGACGCTCATG
1 ACCTTTGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATG
10704 CTGCTTAAGC
Statistics
Matches: 1117, Mismatches: 141, Indels: 145
0.80 0.10 0.10
Matches are distributed among these distances:
205 5 0.00
206 24 0.02
207 3 0.00
208 9 0.01
209 142 0.13
210 203 0.18
211 60 0.05
212 12 0.01
213 16 0.01
214 2 0.00
215 2 0.00
216 2 0.00
217 26 0.02
218 13 0.01
219 344 0.31
220 200 0.18
221 54 0.05
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (219 bp):
ACCTTTGGCATTTTGGCCATTTTTTGCTCCCGACGCTCATGATGTAACACCTATGGCATTTTGGC
ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGACCCCCGACGCTCATGCTAG
TTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTT
GGCCCCCGACGCTCATGGTGTAAC
Found at i:9761 original size:85 final size:86
Alignment explanation
Indices: 9649--9861 Score: 293
Period size: 85 Copynumber: 2.5 Consensus size: 86
9639 ACCTATGGCA
* * *
9649 TTTTGGCCCCCGACGCTCATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCATGATTTAA
1 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGACCCCCGACGCTCATGATGTAA
**
9714 CACCTTCGACATTTTGGCAAT
66 CACCTTCGACATTTTAACAAT
* * * * *
9735 TTTTT-CCCCCGACGCTTATGATGTAACACCTATGGTATTTTGGCCCCCGACGCTTATGGTGTAA
1 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGACCCCCGACGCTCATGATGTAA
* * *
9799 CACCTTTGGCATTTTAACCAT
66 CACCTTCGACATTTTAACAAT
*
9820 TTTTTGCCCCCGACGCTCATGATGTAACACCTACGGCATTTT
1 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTT
9862 AGCTTCCAAC
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 73 0.66
86 37 0.34
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (86 bp):
TTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGACCCCCGACGCTCATGATGTAA
CACCTTCGACATTTTAACAAT
Found at i:9803 original size:123 final size:124
Alignment explanation
Indices: 9525--9813 Score: 400
Period size: 124 Copynumber: 2.3 Consensus size: 124
9515 TTTTAGCCAT
* * * * * *
9525 TTTTTGCCCCCGACGCTAATGATGTAACACCTATGGTATTTTGGCCCCCGATGCTCAAGGTGTAA
1 TTTTGGCCCCCGACGCTAATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCAAGATGTAA
* * * * * *
9590 CACCTTTGGCATTTTGGCCATTTTTTGTCCCCGGCGCTCATTATGTAACACCTATGGCA
66 CACCTTCGACATTTTGGCAATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCA
* * *
9649 TTTTGGCCCCCGACGCTCATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCATGATTTAA
1 TTTTGGCCCCCGACGCTAATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCAAGATGTAA
* *
9714 CACCTTCGACATTTTGGCAATTTTTT-CCCCCGACGCTTATGATGTAACACCTATGGTA
66 CACCTTCGACATTTTGGCAATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCA
* *
9772 TTTTGGCCCCCGACGCTTATGGTGTAACACCTTTGGCATTTT
1 TTTTGGCCCCCGACGCTAATGGTGTAACACCTATGGCATTTT
9814 AACCATTTTT
Statistics
Matches: 146, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
123 67 0.46
124 79 0.54
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.33
Consensus pattern (124 bp):
TTTTGGCCCCCGACGCTAATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCAAGATGTAA
CACCTTCGACATTTTGGCAATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGGCA
Found at i:9834 original size:343 final size:343
Alignment explanation
Indices: 9048--9840 Score: 1029
Period size: 343 Copynumber: 2.3 Consensus size: 343
9038 ACCTATGGCA
* * ** * * * *
9048 TTTTGGCCCCCGACGCTCATGATATAACACCTATGATATTTTAGTTCCTGACGCTCATGATTTTA
1 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGATATTTT-GGCCCCGACGCTCATGGTGTAA
* * * * * * * *
9113 CACATTCGACATTTTAGCCATTTTTTGCCCCTGACACCCATGGTGGTTAACCTTTGGCATTTTAG
65 CACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGCTAGTTAACCTTTGGCATTTTAG
** * * *
9178 CCATTTTTTGCCCCCGACGCTGTTGATGTAACACCTATGTCATTTTTGCCCCGACGCTTATGGAG
130 CCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGTCATTTTGGCCCCGACGCTCAAGGAG
*
9243 TAACACCTTTGGCATTTTAGCCATTTTTTGCCTTCGACGCTCATTATGTAACACCTACGGCATTT
195 TAACACCTTTGGCATTTTAGCCATTTTTTGCCTCCGACGCTCATTATGTAACACCTACGGCATTT
*
9308 TTAGCCCCCGACGCTAATGATGTAACACATATGGCATTTTGGCACCCGACGCTCAGGATGTAACA
260 TTAGCCCCCGACGCTAATGATGTAACACATATGGCATTTTGACACCCGACGCTCAGGATGTAACA
* * *
9373 CCTTTGGCATTTTGGCTAT
325 CCTTCGACATTTTGGCAAT
* * ** *
9392 TTTTTGCTCCCGACGCTCATTATGTAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAAC
1 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGATATTTTGGCCCCGACGCTCATGGTGTAAC
* * ** *
9457 ACCTTTAGCATTTT-GGCAAGTTTTGACACCCGACGCTCATGCTAGTTAACCTTTGGCATTTTAG
66 ACCTTTGGCATTTTAGCCATTTTTTG-CCCCCGACGCTCATGCTAGTTAACCTTTGGCATTTTAG
*
9521 CCATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGT-ATTTTGGCCCCCGATGCTCAAGG
130 CCATTTTTTGCCCCCGACGCTAATGATGTAACACCTAT-GTCATTTTGG-CCCCGACGCTCAAGG
* * * *
9585 TGTAACACCTTTGGCATTTTGGCCATTTTTTGTCC-CCGGCGCTCATTATGTAACACCTATGGCA
193 AGTAACACCTTTGGCATTTTAGCCATTTTTTG-CCTCCGACGCTCATTATGTAACACCTACGGCA
* * * * * * *
9649 -TTTTGGCCCCCGACGCTCATGGTGTAACACCTATGGCATTTTGACCCCCGACGCTCATGATTTA
257 TTTTTAGCCCCCGACGCTAATGATGTAACACATATGGCATTTTGACACCCGACGCTCAGGATGTA
9713 ACACCTTCGACATTTTGGCAAT
322 ACACCTTCGACATTTTGGCAAT
* * *
9735 TTTTT-CCCCCGACGCTTATGATGTAACACCTATGGTATTTTGGCCCCCGACGCTTATGGTGTAA
1 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGATATTTTGG-CCCCGACGCTCATGGTGTAA
*
9799 CACCTTTGGCATTTTAACCATTTTTTGCCCCCGACGCTCATG
65 CACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATG
9841 ATGTAACACC
Statistics
Matches: 382, Mismatches: 61, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
342 41 0.11
343 226 0.59
344 113 0.30
345 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.34
Consensus pattern (343 bp):
TTTTTGCCCCCGACGCTCATGATGTAACACCTATGATATTTTGGCCCCGACGCTCATGGTGTAAC
ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGCTAGTTAACCTTTGGCATTTTAGC
CATTTTTTGCCCCCGACGCTAATGATGTAACACCTATGTCATTTTGGCCCCGACGCTCAAGGAGT
AACACCTTTGGCATTTTAGCCATTTTTTGCCTCCGACGCTCATTATGTAACACCTACGGCATTTT
TAGCCCCCGACGCTAATGATGTAACACATATGGCATTTTGACACCCGACGCTCAGGATGTAACAC
CTTCGACATTTTGGCAAT
Found at i:9917 original size:600 final size:595
Alignment explanation
Indices: 8337--9922 Score: 1635
Period size: 600 Copynumber: 2.6 Consensus size: 595
8327 GACGCTCATA
* * * * * *
8337 ATGTAACACTTATGGCATTTTGG-CCCCGACGCTCATGGTGTAACACATTTGGCATTTGGGCCAT
1 ATGTAACACCTATGGTATTTTGGCCCCCGACGCTCAAGGTGTAACACCTTTAGCATTTAGGCCAT
* * * * *
8401 TTTTTCCCCCGACGCTCATTATGTAACACTTATGGCATTTTGGCCCCCGACGCTCATGATGTAAA
66 TTTTTCCCCCGACGCTAATTATGTAAAACCTATGGCATTTTGGCCCCCGACGCTCATGATATAAC
* * * * * * * * *
8466 ACCTATGGCATTTT-GTCTCCCGACGCTCATGGA-GTAACTCCTTTGGCGTTTTGGTC-ATTTTT
131 ACCTATGACATTTTAG-CCCCCGACGCTCAT-GATTTAACACATTCGACATTTTAG-CAATTTTT
* * * * * * * *
8528 GGCCCCCGACACTCATGGTGGTTAACCTTTGGCAATTTAGCCATTTTTTGACCCCGACGCTCATT
193 TGCCCCCGACACCCATGATGGTAAACCTATGG----TT---CATTTTTGGCCCCCGACGCT-GTT
* * * * * * *** *
8593 -ATGTAACACATACGACATTTTAGCCCCCGACGCTCATGGTGTAACACGTTTAGCATTTTGGCCA
250 GATGTAACACCTATGTCATTTTTG-CCCCGACGCTCATGGAGTAACACCTACGGCATTTTAGCC-
* * * * * * * *
8657 GTTTTGGCCCCCGACGCTCATGCTGGTTA-ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACG
313 --TTT---CCTCAACACTCATGAT-GTAACACCTTTAGCATTTTGGCCATT-TTAGCCCCCGACG
* * *
8721 CTAATGATGTAACACCTATGACATTTTGGCACCCGACGCTCATGATGTTACACCCTTGGCATTTT
371 CTAATGATGTAACACATATGACATTTTGGCACCCGACGCTCAGGATGTAACACCCTTGGCATTTT
8786 GGCTATTTTTTGCTCCCGACGCTCATTATATAACACCTATGCCATTTTGGCACCGACGCTCATGG
436 GGCTATTTTTTGCTCCCGACGCTCATTATATAACACCTATGCCATTTTGGCACCGACGCTCATGG
* * *
8851 TGTAACATCTTTAGCATTTTGGCAAGTTTTGGCCCCCGACGCTCATGCTAGTTAACCTTTAGCAT
501 TGTAACACCTTTAGCATTTTGGCAAGTTTTGACACCCGACGCTCATGCTAGTTAACCTTTAGCAT
8916 TTTAGCCATTCTTTACCCCCAACGCATATG
566 TTTAGCCATTCTTTACCCCCAACGCATATG
* *
8946 ATGTAACACCTATGGTATTTTGGCCCCCGACGCTCATGGTGTAACACCTTTAGCATTTAGGGCAT
1 ATGTAACACCTATGGTATTTTGGCCCCCGACGCTCAAGGTGTAACACCTTTAGCATTTAGGCCAT
9011 TTTTTCCCCCGACGCTAATTATGTAAAACCTATGGCATTTTGGCCCCCGACGCTCATGATATAAC
66 TTTTTCCCCCGACGCTAATTATGTAAAACCTATGGCATTTTGGCCCCCGACGCTCATGATATAAC
* ** * * *
9076 ACCTATGATATTTTAGTTCCTGACGCTCATGATTTTACACATTCGACATTTTAGCCATTTTTTGC
131 ACCTATGACATTTTAGCCCCCGACGCTCATGATTTAACACATTCGACATTTTAGCAATTTTTTGC
* * * * *
9141 CCCTGACACCCATGGTGGTTAACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTGTTGATG
196 CCCCGACACCCATGATGGTAAACCTATGG----TT---CATTTTTGGCCCCCGACGCTGTTGATG
* **
9206 TAACACCTATGTCATTTTTGCCCCGACGCTTATGGAGTAACACCTTTGGCATTTTAGCCATTTTT
254 TAACACCTATGTCATTTTTGCCCCGACGCTCATGGAGTAACACCTACGGCATTTTAGCC----TT
* * *
9271 TGCCTTCGACGCTCATTATGTAACACC--TA-C-----GG-CATTTTTAGCCCCCGACGCTAATG
315 T-CC-TCAACACTCATGATGTAACACCTTTAGCATTTTGGCCA-TTTTAGCCCCCGACGCTAATG
* *
9327 ATGTAACACATATGGCATTTTGGCACCCGACGCTCAGGATGTAACACCTTTGGCATTTTGGCTAT
377 ATGTAACACATATGACATTTTGGCACCCGACGCTCAGGATGTAACACCCTTGGCATTTTGGCTAT
*
9392 TTTTTGCTCCCGACGCTCATTATGTAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAAC
442 TTTTTGCTCCCGACGCTCATTATATAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAAC
*
9457 ACCTTTAGCATTTTGGCAAGTTTTGACACCCGACGCTCATGCTAGTTAACCTTTGGCATTTTAGC
507 ACCTTTAGCATTTTGGCAAGTTTTGACACCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGC
* * *
9522 CATTTTTTGCCCCCGACGC-TAATG
572 CATTCTTTACCCCCAACGCAT-ATG
* * *
9546 ATGTAACACCTATGGTATTTTGGCCCCCGATGCTCAAGGTGTAACACCTTTGGCATTTTGGCCAT
1 ATGTAACACCTATGGTATTTTGGCCCCCGACGCTCAAGGTGTAACACCTTTAGCATTTAGGCCAT
* * * * * *
9611 TTTTTGTCCCCGGCGCTCATTATGTAACACCTATGGCATTTTGGCCCCCGACGCTCATGGTGTAA
66 TTTTT-CCCCCGACGCTAATTATGTAAAACCTATGGCATTTTGGCCCCCGACGCTCATGATATAA
* * *
9676 CACCTATGGCATTTT-GACCCCCGACGCTCATGATTTAACACCTTCGACATTTTGGCAATTTTTT
130 CACCTATGACATTTTAG-CCCCCGACGCTCATGATTTAACACATTCGACATTTTAGCAATTTTTT
* ** *
9740 -CCCCCGACGCTTATGAT-GTAACACCTATGG-T-A-TTTTGGCCCCCGACGCT-TATGGTGTAA
194 GCCCCCGACACCCATGATGGTAA-ACCTATGGTTCATTTTTGGCCCCCGACGCTGT-TGATGTAA
*
9799 CACCTTTGGCATTTTAACCATTTTTTGCCCCCGACGCTCAT-GATGTAACACCTACGGCATTTTA
257 CACC--T---A-TGT---CA-TTTTTG-CCCCGACGCTCATGGA-GTAACACCTACGGCATTTTA
* *
9863 G-C-TT-C-CAACACTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCT
310 GCCTTTCCTCAACACTCATGATGTAACACCTTTAGCATTTTGGCCA-TTTTAGCCCCCGACGCT
9923 CATGCTGGTT
Statistics
Matches: 842, Mismatches: 100, Indels: 79
0.82 0.10 0.08
Matches are distributed among these distances:
589 1 0.00
590 27 0.03
591 18 0.02
592 1 0.00
593 3 0.00
594 1 0.00
595 4 0.00
596 2 0.00
599 8 0.01
600 336 0.40
601 140 0.17
606 1 0.00
607 1 0.00
608 5 0.01
609 74 0.09
610 219 0.26
611 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (595 bp):
ATGTAACACCTATGGTATTTTGGCCCCCGACGCTCAAGGTGTAACACCTTTAGCATTTAGGCCAT
TTTTTCCCCCGACGCTAATTATGTAAAACCTATGGCATTTTGGCCCCCGACGCTCATGATATAAC
ACCTATGACATTTTAGCCCCCGACGCTCATGATTTAACACATTCGACATTTTAGCAATTTTTTGC
CCCCGACACCCATGATGGTAAACCTATGGTTCATTTTTGGCCCCCGACGCTGTTGATGTAACACC
TATGTCATTTTTGCCCCGACGCTCATGGAGTAACACCTACGGCATTTTAGCCTTTCCTCAACACT
CATGATGTAACACCTTTAGCATTTTGGCCATTTTAGCCCCCGACGCTAATGATGTAACACATATG
ACATTTTGGCACCCGACGCTCAGGATGTAACACCCTTGGCATTTTGGCTATTTTTTGCTCCCGAC
GCTCATTATATAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAACACCTTTAGCATTTT
GGCAAGTTTTGACACCCGACGCTCATGCTAGTTAACCTTTAGCATTTTAGCCATTCTTTACCCCC
AACGCATATG
Found at i:10140 original size:85 final size:85
Alignment explanation
Indices: 9956--10145 Score: 247
Period size: 85 Copynumber: 2.2 Consensus size: 85
9946 TTAGCCATTC
* *
9956 TTTGCCCCCGACGCTAATGATGTAAAACCTATGGCATTTTGGCACCCGACGCTCATGATGTAACA
1 TTTGCCCCCGACGCTCATGATGTAAAACCTATGGCATTTTGGCACCCAACGCTCATGATGTAACA
* * * * *
10021 CCTTTGGCATTTTGGCTATT
66 CCTTTAGAATTTTGACCAGT
* * * * *
10041 TCTTGCTCTCGACGCTCATTATGTAACACCTATGGCATTTTGGCA-CCAACGCTCATGGTGTAAC
1 T-TTGCCCCCGACGCTCATGATGTAAAACCTATGGCATTTTGGCACCCAACGCTCATGATGTAAC
10105 ACCTTTAGAATTTTGACCAGT
65 ACCTTTAGAATTTTGACCAGT
10126 TTTGACCCCCGACGCTCATG
1 TTTG-CCCCCGACGCTCATG
10146 CTAGTTAACC
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
84 3 0.03
85 47 0.53
86 38 0.43
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (85 bp):
TTTGCCCCCGACGCTCATGATGTAAAACCTATGGCATTTTGGCACCCAACGCTCATGATGTAACA
CCTTTAGAATTTTGACCAGT
Found at i:10292 original size:87 final size:86
Alignment explanation
Indices: 10152--10339 Score: 277
Period size: 87 Copynumber: 2.2 Consensus size: 86
10142 CATGCTAGTT
*
10152 AACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGG
1 AACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGAATTTTGG
*
10217 GACCCCACGCTCATGATATAA
66 CACCCCACGCTCATGATATAA
* * *
10238 CACCTTTGGCATTTTGGCCATTTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGAATTTTG
1 AACCTTTGGCATTTTCGCCA-CTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGAATTTTG
*** *
10303 GCACTTGACGCTCATGATGTAA
65 GCACCCCACGCTCATGATATAA
*
10325 AACCTATGGCATTTT
1 AACCTTTGGCATTTT
10340 AGTTCTTGAC
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
86 18 0.20
87 72 0.80
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (86 bp):
AACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACGCTAATGATGTAACACCTATGGAATTTTGG
CACCCCACGCTCATGATATAA
Found at i:10454 original size:48 final size:48
Alignment explanation
Indices: 10351--10458 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
10341 GTTCTTGACG
* * **
10351 CTCATGATTTAACACCTTCGGCATTTTAGCCATTTTTTGCCCCCGAGG
1 CTCATGATGTAACACCTTCGACATTTTAGCCATTTTTTGCCCCCGACA
* * * * *
10399 CTTATGATGTATCACCTTTGACATTTTGGTCATTTTATT-CCCCCGACA
1 CTCATGATGTAACACCTTCGACATTTTAGCCATTTT-TTGCCCCCGACA
10447 CTCATGATGTAA
1 CTCATGATGTAA
10459 TACTTATGGC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
48 46 0.96
49 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (48 bp):
CTCATGATGTAACACCTTCGACATTTTAGCCATTTTTTGCCCCCGACA
Found at i:10494 original size:172 final size:173
Alignment explanation
Indices: 10229--10654 Score: 431
Period size: 172 Copynumber: 2.5 Consensus size: 173
10219 CCCCACGCTC
* * *
10229 ATGATATAACACCTTTGGCATTTTGGCCATTTTTTTGCCCCCGACGCTAATGATGTAACACCTAT
1 ATGATATAACACCTTTGACATTTTGGCCATTTTATTGCCCCCGACACTAATGATGTAACACCTAT
** * * **
10294 GGAATTTTGGCACTTGACGCTCATGATGTAAAACCTATGGCATTTTAGT-TCTTGACGCTCATGA
66 GGAATTTTGGCACCCGACACTAATGATGTAAAACCTATGGCATTTT-GTCTCCCGACGCTCATGA
* * *
10358 TTTAACACCTTCGGCATTTTAGCCATTTTTTGCCCCCGAGGCTT
130 TGTAACACCTTCGGAATTTTAGCCATTTTTAGCCCCCGAGGCTT
* * * * * *
10402 ATGATGTATCACCTTTGACATTTTGGTCATTTTATT-CCCCCGACACTCATGATGTAATACTTAT
1 ATGATATAACACCTTTGACATTTTGGCCATTTTATTGCCCCCGACACTAATGATGTAACACCTAT
* * * * *
10466 GGCATTTTGGCCCCCGACACTAATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTTATGGT
66 GGAATTTTGGCACCCGACACTAATGATGTAAAACCTATGGCATTTTGTCTCCCGACGCTCATGAT
* * * *
10531 GTAACACCTTTGGAATTTTGGCCATTTTTAG-CCCCGAAGCTC
131 GTAACACCTTCGGAATTTTAGCCATTTTTAGCCCCCGAGGCTT
* * * * * *
10573 ATGGTGGTTA-ACCTTTGGCATTTTAGCCA-TTT-TTG-CCCCGACGCTCAA-GATGTAACACCT
1 ATGAT-ATAACACCTTTGACATTTTGGCCATTTTATTGCCCCCGACACT-AATGATGTAACACCT
* *
10633 A-CGACATTATGGC-CCCGACACT
64 ATGGA-ATTTTGGCACCCGACACT
10655 CATGGTTTAA
Statistics
Matches: 208, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
168 10 0.05
169 29 0.14
170 4 0.02
171 31 0.15
172 103 0.50
173 31 0.15
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (173 bp):
ATGATATAACACCTTTGACATTTTGGCCATTTTATTGCCCCCGACACTAATGATGTAACACCTAT
GGAATTTTGGCACCCGACACTAATGATGTAAAACCTATGGCATTTTGTCTCCCGACGCTCATGAT
GTAACACCTTCGGAATTTTAGCCATTTTTAGCCCCCGAGGCTT
Found at i:10577 original size:47 final size:46
Alignment explanation
Indices: 10516--10632 Score: 146
Period size: 47 Copynumber: 2.5 Consensus size: 46
10506 CATTTTGTCT
* *
10516 CCCGACGCTTATGGTGTAACACCTTTGGAATTTTGGCCATTTTTAGC
1 CCCGACGCTCATGGTGTAACACCTTTGGAATTTTAGCCATTTTT-GC
* * *
10563 CCCGAAGCTCATGGTGGTTA-ACCTTTGGCATTTTAGCCATTTTTGC
1 CCCGACGCTCATGGT-GTAACACCTTTGGAATTTTAGCCATTTTTGC
* *
10609 CCCGACGCTCAAGATGTAACACCT
1 CCCGACGCTCATGGTGTAACACCT
10633 ACGACATTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
45 3 0.05
46 18 0.31
47 35 0.59
48 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (46 bp):
CCCGACGCTCATGGTGTAACACCTTTGGAATTTTAGCCATTTTTGC
Found at i:10719 original size:128 final size:132
Alignment explanation
Indices: 10468--10735 Score: 339
Period size: 128 Copynumber: 2.1 Consensus size: 132
10458 ATACTTATGG
* * * * * * *
10468 CATTTTGGCCCCCGACACTAATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTTATGGTGT
1 CATTTTTGCCCCCGACACTAATGATGTAACACCTACGACATTATGGCTCCCGACACTCATGGTGT
* * *
10533 AACACCTTTGGAATTTTGGCCATTTTTAGCCCCGAAGCTCATGGTGGTTAACCTTTGGCATTTTA
66 AACACCTTTAGAATTTTGGCCATTTTTAGCCCCGAAGCTCATGCTGCTTAACCTTTGGCATTTTA
10598 GC
131 GC
* *
10600 CATTTTTG-CCCCGACGCTCAA-GATGTAACACCTACGACATTATGGC-CCCGACACTCATGGTT
1 CATTTTTGCCCCCGACACT-AATGATGTAACACCTACGACATTATGGCTCCCGACACTCATGGTG
* * * *
10662 TAACACCTTTAGCA-TTTGGCCA-TTTTGGCCCCGACGCTCATGCTGCTTAAGCTTTGGCATTTT
65 TAACACCTTTAGAATTTTGGCCATTTTTAGCCCCGAAGCTCATGCTGCTTAACCTTTGGCATTTT
10725 AGC
130 AGC
10728 CAATTTTT
1 C-ATTTTT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
128 40 0.34
129 14 0.12
130 25 0.21
131 30 0.25
132 9 0.08
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (132 bp):
CATTTTTGCCCCCGACACTAATGATGTAACACCTACGACATTATGGCTCCCGACACTCATGGTGT
AACACCTTTAGAATTTTGGCCATTTTTAGCCCCGAAGCTCATGCTGCTTAACCTTTGGCATTTTA
GC
Done.