Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014059.1 Corchorus olitorius cultivar O-4 contig14092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2128

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85--1713
48
37.5
47
66
20
375
20
27
18
33
1.96
20--256
86
2.8
85
79
8
221
19
27
18
34
1.95
105--753
134
4.9
133
72
15
402
20
27
18
34
1.96
260--338
37
2.1
38
86
6
108
17
25
17
39
1.92
218--449
85
2.7
85
82
8
265
18
28
17
34
1.94
1--556
220
2.5
217
86
3
758
19
27
18
34
1.95
419--521
47
2.2
47
81
6
120
18
27
20
33
1.96
485--1528
38
24.6
38
66
22
319
20
27
19
32
1.96
438--835
85
4.7
86
74
15
333
21
27
19
31
1.97
392--717
171
1.9
169
89
1
508
21
26
19
31
1.97
523--1032
219
2.3
218
89
2
772
21
26
19
33
1.97
743--816
37
2.0
37
84
10
98
24
28
16
31
1.96
681--990
133
2.3
133
81
5
358
20
26
18
34
1.96
672--860
85
2.2
86
82
6
224
21
26
17
34
1.96
1128--1540
86
4.8
84
74
15
342
19
28
19
32
1.96
1155--1931
134
6.0
133
75
10
604
20
26
18
34
1.96
875--1979
258
4.3
251
78
11
912
19
26
19
34
1.96
1373--1587
86
2.5
85
82
8
249
20
26
19
33
1.96
1554--1761
86
2.4
86
84
6
260
22
26
18
32
1.97
1612--1846
126
1.9
121
82
6
292
22
22
19
35
1.96
1857--1973
38
3.1
38
82
1
135
22
27
18
31
1.97
1935--2056
49
2.5
50
77
9
142
19
27
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1640--2104
174
2.7
170
77
6
449
21
25
17
34
1.95

Tables:   1

The End!