Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014060.1 Corchorus olitorius cultivar O-4 contig14093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2616
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Found at i:115 original size:38 final size:38
Alignment explanation
Indices: 72--178 Score: 142
Period size: 38 Copynumber: 2.8 Consensus size: 38
62 AGCCATTTTT
* * *
72 CCCCCGACGCTCATTATGTAACACTTATGGCATTTTGG
1 CCCCCGACGCTCATGATGTAACACCTATGGCATTTCGG
*
110 CCCCCGACGCTCATGATGTAACACCTATGGCATTTCGT
1 CCCCCGACGCTCATGATGTAACACCTATGGCATTTCGG
* * * *
148 CTCCCGACGCTCATGGTGTAACTCCTTTGGC
1 CCCCCGACGCTCATGATGTAACACCTATGGC
179 GTTTTGGTCA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.19, C:0.33, G:0.20, T:0.29
Consensus pattern (38 bp):
CCCCCGACGCTCATGATGTAACACCTATGGCATTTCGG
Found at i:210 original size:48 final size:46
Alignment explanation
Indices: 150--2128 Score: 351
Period size: 48 Copynumber: 45.8 Consensus size: 46
140 CATTTCGTCT
* * *
150 CCCGACGCTCATGGTGTAACTCCTTTGGCGTTTTGGTCATTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTT-GAC
* *
198 CCCGACGCTCATGGTGGTTAA-CCTTTGGCATTTTAGCCATTTTTTAC
1 CCCGACGCTCATGGT-G-TAACCCTTTGGCATTTTGGCCATTTTTGAC
* * *
245 CCTGACGCTAATGGTGTAACACCTATGGCATTTTGG-C-------A-
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * * *
283 CCCGACGCTCATGATATAACACCTTTGGCATTTTAGCAATTTTTTGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGAC
* ** *
331 CCCGACGCTCATGATGTAACACCTACGGCATTTTAG-C----TT---
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * * *
370 -CCAACACTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGAC
* * *
417 CCCGACGCTCA------AGCCCTTTGGCA--TT-----TTTTGGCC
1 CCCGACGCTCATGGTGTAACCCTTTGGCATTTTGGCCATTTTTGAC
* * *
450 CCCGACGCTCATGCTGCTTAA-CCTTTGGCATTTTAGCCAATTTTTGCC
1 CCCGACGCTCATGGTG--TAACCCTTTGGCATTTTGGCC-ATTTTTGAC
* * * *
498 CCCGACGCTAATGATGTAACACCTATGGCCTTTTGG-C-------A-
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * *
536 CCCGACGCTCATGGTGTAACACCTATGG-A--AT-----TTTTTGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
** * *
575 CCCGACGCTCATAATGTAACAC-TT---A---TGG-CA-TTTTGGC
1 CCCGACGCTCATGGTGTAACCCTTTGGCATTTTGGCCATTTTTGAC
* *
612 CCCGACGCTCATGGTGTAACACATTTGGCATTTTGGCCATTTTT-TC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
** *
658 CCCTGACGCTCATTATGTAACACCTATGGCATTTTGG-C--------C
1 CCC-GACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * *
697 CCCGACGCTCATGATGTAACACCTATGGCA-TTT---C--GTCT---
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * *
735 CCCGACGCTCATGGTGTAACTCCTTTGGCGTTTTGGTCATTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTT-GAC
* * *
783 CCCGACGCTCATGGTGGTTAA--CTTTGGCATTTTAGCTATTTTTTGCC
1 CCCGACGCTCATGGT-G-TAACCCTTTGGCATTTTGGCCA-TTTTTGAC
** *
830 CCCGACGCTCATAATGTAACACC--T---A---T-GTCATTTTTG-C
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * *
867 CCCGACACTCATGGTGTAACACATTTGACATTTTGGCCATTTTT-CC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
** * *
913 CCCGACGCTCATTATGTAACACC--T---A---T-GCCATTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * *
951 CCCGACGCTCATGATGTAACACCTATGGCATTTT-G-----TCT---
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * * *
989 CCCGACGCTCATGCTGTAACTCCTTTGACGTTTTGGTCATTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTT-GAC
* * *
1037 CCCGACGCTCATGGTGGTTAA-CCTTTGACATTTTAGCCATTTTTTGCC
1 CCCGACGCTCATGGT-G-TAACCCTTTGGCATTTTGGCCA-TTTTTGAC
* *
1085 CCCGACGCTCATGATGTAACACC--T---A---T-GTCATTTTTG-C
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* *
1122 CCCGACGCGT-ATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTGCC
1 CCCGACGC-TCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGAC
* ** *
1170 CCCGACGCTCATGATGTAACACCTACGGCATTTTAG-C----TT---
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * * *
1209 -CCGACACTCATGGTGTAACACCTTTAGCATTTTAGCCAGTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGAC
* *
1256 CCCGACGCTCA---TG---CCCTTTGGCATTTTAGCCATTCTTTGCC
1 CCCGACGCTCATGGTGTAACCCTTTGGCATTTTGGCCATT-TTTGAC
* * *
1297 CCCGACGCTAATGATGTAACACCTATGGCATTTTGG-C-------A-
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * *
1335 CCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCCATTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTT-GAC
* * *
1383 CCCGACGCTCATGCTGCTTAA-CCTTTGGCATTTTACGCCAATTTTTGCC
1 CCCGACGCTCATGGTG--TAACCCTTTGGCATTTT-GGCC-ATTTTTGAC
* * *
1432 CCCGACGCTCATGATGTAACACTTATGGCATTTTAG-C----TT---
1 CCCGACGCTCATGGTGTAACCCTT-TGGCATTTTGGCCATTTTTGAC
* * *
1471 -CCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGAC
* * *
1518 CCCGACGCTCATGCTGGTTAA-CCTTTGGCATTTTAGCCATTCTTTGCC
1 CCCGACGCTCATGGT-G-TAACCCTTTGGCATTTTGGCCATT-TTTGAC
* * *
1566 CCCGACGCTAATGATGTAACACCTATGGCATTTTGG-C-------A-
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* *
1604 CCCGACGCTCATGATGTAACACCTTTGGCATTTTGGCTATTTCTTG-C
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTT-TTGAC
* ** * *
1651 TCTCGACGCTCATTATGTAACATCTATGGCATTTTGG-C-------A-
1 -CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * * *
1690 -CCAACGCTCATGGTGTAACACCTTTAGCATTTTGACC-TGTTTTGGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCAT-TTTT-GAC
* * * *
1737 CCCGACGCTCATGCTAGTTTA-CCTTTGGCATTTTCGCCACTTTTTGCC
1 CCCGACGCTCATGGT-G-TAACCCTTTGGCATTTTGGCCA-TTTTTGAC
* * ** * *
1785 CCCGGCGCTAATTATGTAAATCCTATGGCATTTTGG--------GA-
1 CCCGACGCTCATGGTGT-AACCCTTTGGCATTTTGGCCATTTTTGAC
* * * * *
1823 CCCGACGCTCATGATATAACACCTTTGTCATTTTAGCCATTTTTTGCC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGAC
* * *
1871 CCCGACGCTCATGATGTAACACCTAAT-GCATTTTAG-C----TT---
1 CCCGACGCTCATGGTGTAAC-CCT-TTGGCATTTTGGCCATTTTTGAC
* * *
1910 -CCGATGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGACC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCA-TTTTTGA-C
* * *
1958 CCCGACGCTCATGCTAGTTAA-CCTTTGGCATTTTAGCCATTTTTTTACC
1 CCCGACGCTCATGGT-G-TAACCCTTTGGCATTTTGGCCA-TTTTTGA-C
* * *
2007 CCCGACGCAT-ATGATGTAACACCTATGGTATTTTGG-C--------C
1 CCCGACGC-TCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
* * **
2045 CACGACGCTCATGGTGTAACACCTTTGGCATTTTGGCTATTTTTTTC
1 CCCGACGCTCATGGTGTAAC-CCTTTGGCATTTTGGCCATTTTTGAC
** * *
2092 CCCGACGCTCATTATGTAAAACCTATGGCATTTTGGC
1 CCCGACGCTCATGGTGT-AACCCTTTGGCATTTTGGC
2129 GCACGACGCT
Statistics
Matches: 1470, Mismatches: 211, Indels: 501
0.67 0.10 0.23
Matches are distributed among these distances:
33 19 0.01
34 1 0.00
35 3 0.00
37 108 0.07
38 414 0.28
39 47 0.03
40 14 0.01
41 43 0.03
42 17 0.01
43 3 0.00
44 11 0.01
45 13 0.01
46 55 0.04
47 146 0.10
48 443 0.30
49 104 0.07
50 26 0.02
51 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (46 bp):
CCCGACGCTCATGGTGTAACCCTTTGGCATTTTGGCCATTTTTGAC
Found at i:290 original size:38 final size:39
Alignment explanation
Indices: 243--316 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 39
233 GCCATTTTTT
* *
243 ACCCTGACGCTAATGGTGTAACACCTATGGCATTTTGGC
1 ACCCTGACGCTAATGATATAACACCTATGGCATTTTGGC
* *
282 ACCC-GACGCTCATGATATAACACCTTTGGCATTTT
1 ACCCTGACGCTAATGATATAACACCTATGGCATTTT
317 AGCAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 27 0.87
39 4 0.13
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (39 bp):
ACCCTGACGCTAATGATATAACACCTATGGCATTTTGGC
Found at i:307 original size:85 final size:85
Alignment explanation
Indices: 190--1970 Score: 1036
Period size: 86 Copynumber: 20.8 Consensus size: 85
180 TTTTGGTCAT
* * *
190 TTTTGGCCCCCGACGCTCATGGTGGTTA-ACCTTTGGCATTTTAGCCATTTTTTACCCTGACGCT
1 TTTTGGCCCCCGACGCTCATGGT-GTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCT
* *
254 AATGGTGTAACACCTATGGCA
65 CATGATGTAACACCTATGGCA
* * * *
275 TTTTGGCACCCGACGCTCATGATATAACACCTTTGGCATTTTAGCAATTTTTTGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACGCT
*
340 CATGATGTAACACCTACGGCA
65 CATGATGTAACACCTATGGCA
* ** * * * * **
361 TTTTAGCTTCCAACACTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCA-TTTTTTCCCCCGACGCT
*
426 CA--A-G---C-CCTTTGGCA
65 CATGATGTAACACCTATGGCA
* * *
440 TTTTTTGGCCCCCGACGCTCATGCTGCTTA-ACCTTTGGCATTTTAGCCAATTTTTGCCCCCGAC
1 --TTTTGGCCCCCGACGCTCATGGTG-TAACACCTTTGGCATTTTAGCC-ATTTTTTCCCCCGAC
* *
504 GCTAATGATGTAACACCTATGGCC
62 GCTCATGATGTAACACCTATGGCA
* *
528 TTTTGGCACCCGACGCTCATGGTGTAACACCTATGG------A---ATTTTTTGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACGCT
* *
584 CATAATGTAACACTTATGGCA
65 CATGATGTAACACCTATGGCA
* * *
605 TTTTGG-CCCCGACGCTCATGGTGTAACACATTTGGCATTTTGGCCATTTTTTCCCCTGACGCTC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
*
669 ATTATGTAACACCTATGGCA
66 ATGATGTAACACCTATGGCA
* * * *
689 TTTTGGCCCCCGACGCTCATGATGTAACACCTATGGCA-TTT---C-----GTCTCCCGACGCTC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
* * *
745 ATGGTGTAACTCCTTTGGCGTTTTGGTCA
66 ATGATGTAAC-AC-----C--TATGG-CA
* *
774 TTTTTGGCCCCCGACGCTCATGGTGGTTA-A-CTTTGGCATTTTAGCTATTTTTTGCCCCCGACG
1 -TTTTGGCCCCCGACGCTCATGGT-GTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACG
* *
837 CTCATAATGTAACACCTATGTCA
63 CTCATGATGTAACACCTATGGCA
* * * * *
860 TTTTTG-CCCCGACACTCATGGTGTAACACATTTGACATTTTGGCCA-TTTTTCCCCCGACGCTC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
* *
923 ATTATGTAACACCTATGCCA
66 ATGATGTAACACCTATGGCA
* * *
943 TTTTGGCCCCCGACGCTCATGATGTAACACCTATGGCATTTT-G--------TCTCCCGACGCTC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
* *
999 ATGCTGTAACTCCTTTGACGTTTTGGTCA
66 ATGATGTAACACC--T-A-----TGG-CA
* *
1028 TTTTTGGCCCCCGACGCTCATGGTGGTTA-ACCTTTGACATTTTAGCCATTTTTTGCCCCCGACG
1 -TTTTGGCCCCCGACGCTCATGGT-GTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACG
*
1092 CTCATGATGTAACACCTATGTCA
63 CTCATGATGTAACACCTATGGCA
*
1115 TTTTTG-CCCCGACGCGT-ATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGC
1 TTTTGGCCCCCGACGC-TCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACGC
*
1178 TCATGATGTAACACCTACGGCA
64 TCATGATGTAACACCTATGGCA
* ** * * **
1200 TTTTAGCTTCCGACACTCATGGTGTAACACCTTTAGCATTTTAGCCAGTTTTGGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCA-TTTTTTCCCCCGACGCT
* * ** * * *
1265 CATGCCCTTTGGCA-TTTTAGCCA
65 CATG--ATGTAACACCTAT-GGCA
* * * * *
1288 TTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTT-GGCA--------CCCGACGCT
1 TT-TTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCT
1344 CATGATGTAACACCTTTAGCATTTTGGCCA
65 CATGATGTAACACC--T---A---TGG-CA
* * *
1374 TTTTTGGCCCCCGACGCTCATGCTGCTTA-ACCTTTGGCATTTTACGCCAATTTTTGCCCCCGAC
1 -TTTTGGCCCCCGACGCTCATGGTG-TAACACCTTTGGCATTTTA-GCC-ATTTTTTCCCCCGAC
*
1438 GCTCATGATGTAACACTTATGGCA
62 GCTCATGATGTAACACCTATGGCA
* ** * * **
1462 TTTTAGCTTCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCA-TTTTTTCCCCCGACGCT
* * *
1527 CATGCTGGTTA-ACCTTTGGCA
65 CATGAT-GTAACACCTATGGCA
* * * *
1548 TTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTT-GGCA--------
1 TTTT-G---------GCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCC
*
1604 CCCGACGCTCATGATGTAACACCTTTGGCA
56 CCCGACGCTCATGATGTAACACCTATGGCA
** * * *
1634 TTTTGGCTATTTCTTGCTCTCGACGCTCATTATGTAACATCTATGGCATTTT-GGCA--------
1 TTTTGGC-----C---C-C-CGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCC
* * * *
1690 -CCAACGCTCATGGTGTAACACCTTTAGCATTTTGACCTG
56 CCCGACGCTCATGATGTAACACC--T---A---TG-GC-A
* ** * * *
1729 TTTTGGCCCCCGACGCTCATGCTAGT-TTACCTTTGGCATTTTCGCCACTTTTTGCCCCCGGCGC
1 TTTTGGCCCCCGACGCTCATGGT-GTAACACCTTTGGCATTTTAGCCA-TTTTTTCCCCCGACGC
* *
1793 TAATTATGTAA-ATCCTATGGCA
64 TCATGATGTAACA-CCTATGGCA
** * * *
1815 TTTTGGGACCCGACGCTCATGATATAACACCTTTGTCATTTTAGCCATTTTTTGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACGCT
1880 CATGATGTAACACCTAAT-GCA
65 CATGATGTAACACCT-ATGGCA
* ** * * * **
1901 TTTTAGCTTCCGATGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGACCCCCGACGC
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCA-TTTT-TTCCCCCGACGC
1966 TCATG
64 TCATG
1971 CTAGTTAACC
Statistics
Matches: 1327, Mismatches: 213, Indels: 310
0.72 0.12 0.17
Matches are distributed among these distances:
76 75 0.06
77 39 0.03
78 1 0.00
79 21 0.02
80 3 0.00
81 53 0.04
82 4 0.00
83 41 0.03
84 103 0.08
85 242 0.18
86 461 0.35
87 87 0.07
88 27 0.02
89 37 0.03
90 1 0.00
91 1 0.00
92 1 0.00
93 3 0.00
94 5 0.00
95 32 0.02
96 68 0.05
97 22 0.02
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (85 bp):
TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
ATGATGTAACACCTATGGCA
Found at i:361 original size:133 final size:133
Alignment explanation
Indices: 115--367 Score: 339
Period size: 133 Copynumber: 1.9 Consensus size: 133
105 TTTGGCCCCC
* * * * * * *
115 GACGCTCATGATGTAACACCTATGGCATTTCGTCTCCCGACGCTCATGGTGTAACTCCTTTGGCG
1 GACGCTAATGATGTAACACCTATGGCATTTCGGCACCCGACGCTCATGATATAACACCTTTGGCA
* * * **
180 TTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGGCATTTTAGCCATTTTTTAC
66 TTTTAGTCATTTTTGGCCCCCGACGCTCATGATGGTAAACCTACGGCATTTTAGCCATTTTTTAC
245 CCT
131 CCT
* *
248 GACGCTAATGGTGTAACACCTATGGCATTTTGGCACCCGACGCTCATGATATAACACCTTTGGCA
1 GACGCTAATGATGTAACACCTATGGCATTTCGGCACCCGACGCTCATGATATAACACCTTTGGCA
*
313 TTTTAG-CAATTTTTTGCCCCCGACGCTCATGAT-GTAACACCTACGGCATTTTAGC
66 TTTTAGTC-ATTTTTGGCCCCCGACGCTCATGATGGTAA-ACCTACGGCATTTTAGC
368 TTCCAACACT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
132 4 0.04
133 99 0.96
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (133 bp):
GACGCTAATGATGTAACACCTATGGCATTTCGGCACCCGACGCTCATGATATAACACCTTTGGCA
TTTTAGTCATTTTTGGCCCCCGACGCTCATGATGGTAAACCTACGGCATTTTAGCCATTTTTTAC
CCT
Found at i:541 original size:38 final size:38
Alignment explanation
Indices: 489--2290 Score: 340
Period size: 38 Copynumber: 42.2 Consensus size: 38
479 ATTTTAGCCA
* * *
489 ATTTTTGCCCCCGACGCTAATGATGTAACACCTATGGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * *
527 CTTTTGGCACCCGACGCTCATGGTGTAACACCTATGGA
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * * *
565 ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGC
1 A-TTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * *
604 ATTTTGGC-CCCGACGCTCATGGTGTAACACATTTGGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
*
641 ATTTTGGCCATTTTTTCCCCTGACGCTCATTATGTAACACCTATGGC
1 ATTTTGG-CA-------CCC-GACGCTCATGATGTAACACCTATGGC
*
688 ATTTTGGCCCCCGACGCTCATGATGTAACACCTATGGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * * * * *
726 ATTTCGTCTCCCGACGCTCATGGTGTAACTCCTTTGGCGTTTTGGTC
1 ATTTTGGCACCCGACGCTCATGATGTAAC-AC-----C--TATGG-C
* * * * * *
773 ATTTTTGGCCCCCGACGCTCATGGTGGTTAACTTTGGCATTTTAGC
1 A-TTTTGGCACCCGACGCTCATGAT-G-TAAC----AC-CTATGGC
* * * *
819 TATTTTTTGCCCCCGACGCTCATAATGTAACACCTATGTC
1 -A-TTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * * * * *
859 ATTTTTGC-CCCGACACTCATGGTGTAACACATTTGAC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* *
896 ATTTTGGCCATTTTTCCCCCGACGCTCATTATGTAACACCTATGCC
1 ATTTTGG-CA-------CCCGACGCTCATGATGTAACACCTATGGC
*
942 ATTTTGGCCCCCGACGCTCATGATGTAACACCTATGGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * * *
980 ATTTTGTCTCCCGACGCTCATGCTGTAACTCCTTTGACGTTTTGGTC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC--T-A-----TGG-C
* * * * *
1027 ATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATTTTAGCC
1 A-TTTTGGCACCCGACGCTCATGAT-G-TAA-C----AC-CTAT-GGC
* * *
1075 ATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTC
1 A-TTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * *
1114 ATTTTTGC-CCCGACGCGT-ATGGTGTAACACCTTTGGC
1 ATTTTGGCACCCGACGC-TCATGATGTAACACCTATGGC
* *
1151 ATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGC
1 ATTTT-G---------GCACCCGACGCTCATGATGTAACACCTATGGC
* ** * * *
1199 ATTTTAGCTTCCGACACTCATGGTGTAACACCTTTAGCATTTTAGCC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC--T---A---T-GGC
* * * ** * * *
1246 AGTTTTGGCCCCCGACGCTCATGCCCTTTGGCA-TTTTAGCC
1 A-TTTTGGCACCCGACGCTCATG--ATGTAACACCTAT-GGC
* * *
1287 ATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGC
1 ATT-TTGGCACCCGACGCTCATGATGTAACACCTATGGC
1326 ATTTTGGCACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC--T---A---TGG-C
* * * *
1373 ATTTTTGGCCCCCGACGCTCATGCTGCTTA-ACCTTTGGC
1 A-TTTTGGCACCCGACGCTCATGATG-TAACACCTATGGC
* *
1412 ATTTTACGCCAATTTTTGCCCCCGACGCTCATGATGTAACACTTATGGC
1 ATTTT--G---------GCACCCGACGCTCATGATGTAACACCTATGGC
* ** *
1461 ATTTTAGCTTCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC--T---A---TGG-C
* * * *
1508 AGTTTTGGCCCCCGACGCTCATGCTGGTTA-ACCTTTGGC
1 A-TTTTGGCACCCGACGCTCATGAT-GTAACACCTATGGC
* *
1547 ATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGC
1 ATTTT-G---------GCACCCGACGCTCATGATGTAACACCTATGGC
*
1595 ATTTTGGCACCCGACGCTCATGATGTAACACCTTTGGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* *
1633 ATTTTGGCTATTTCTTGCTCTCGACGCTCATTATGTAACATCTATGGC
1 ATTTTGGC-A-------C-C-CGACGCTCATGATGTAACACCTATGGC
* * *
1681 ATTTTGGCA-CCAACGCTCATGGTGTAACACCTTTAGCATTTTGACC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC--T---A---TG-GC
* * * ** *
1727 TGTTTTGGCCCCCGACGCTCATGCTAGT-TTACCTTTGGC
1 -ATTTTGGCACCCGACGCTCATGAT-GTAACACCTATGGC
* * * *
1766 ATTTTCGCCACTTTTTGCCCCCGGCGCTAATTATGTAA-ATCCTATGGC
1 ATTTT-G---------GCACCCGACGCTCATGATGTAACA-CCTATGGC
* * *
1814 ATTTTGGGACCCGACGCTCATGATATAACACCTTTGTCATTTTAGCC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC----T-A---T-GGC
* *
1861 ATTTTTTGCCCCCGACGCTCATGATGTAACACCTAAT-GC
1 A-TTTTGGCACCCGACGCTCATGATGTAACACCT-ATGGC
* ** * *
1900 ATTTTAGCTTCCGATGCTCATGGTGTAACACCTTTAGCATTTTGGCC
1 ATTTTGGCACCCGACGCTCATGATGTAACACC--T---A---TGG-C
* * * *
1947 AGTTTTGGACCCCCGACGCTCATGCTAGTTA-ACCTTTGGC
1 A-TTTTGG-CACCCGACGCTCATGAT-GTAACACCTATGGC
* *
1987 ATTTTAGCCATTTTTTTACCCCCGACGCAT-ATGATGTAACACCTATGGT
1 ATTTT-GGC--------A--CCCGACGC-TCATGATGTAACACCTATGGC
* *
2036 ATTTTGGC-CCACGACGCTCATGGTGTAACACCTTTGGC
1 ATTTTGGCACC-CGACGCTCATGATGTAACACCTATGGC
* *
2074 ATTTTGGCTATTTTTTTCCCCGACGCTCATTATGTAAAACCTATGGC
1 ATTTTGGC-A--------CCCGACGCTCATGATGTAACACCTATGGC
* *
2121 ATTTTGGCGCACGACGCTCATGATGTAACACCTATGGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * *
2159 ATTTTGTCTCCCGACGCTCATGATGTTACACCTCTGGCATATTGGC
1 ATTTTGGCACCCGACGCTCATGATG-TA-A-CAC---C-TA-TGGC
* * * * *
2205 TATTTTTTGCTCCCGACGCTCATTATGTAAGACCTATGCC
1 -A-TTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
* * *
2245 ATTTTGGCA-CCGACGCTCATGGTGTAACACCTTTAGC
1 ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
2282 ATTTTGGCA
1 ATTTTGGCA
2291 AGTTTTGGCC
Statistics
Matches: 1320, Mismatches: 225, Indels: 439
0.67 0.11 0.22
Matches are distributed among these distances:
37 141 0.11
38 408 0.31
39 69 0.05
40 30 0.02
41 35 0.03
42 4 0.00
43 4 0.00
44 4 0.00
45 12 0.01
46 64 0.05
47 128 0.10
48 322 0.24
49 80 0.06
50 15 0.01
51 1 0.00
53 1 0.00
54 1 0.00
55 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.34
Consensus pattern (38 bp):
ATTTTGGCACCCGACGCTCATGATGTAACACCTATGGC
Found at i:931 original size:46 final size:46
Alignment explanation
Indices: 858--950 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 46
848 ACACCTATGT
* * *
858 CATTTTTGCCCCGACACTCATGGTGTAACACATTTGACATTTTGGC
1 CATTTTTCCCCCGACACTCATGATGTAACACATATGACATTTTGGC
* * * *
904 CATTTTTCCCCCGACGCTCATTATGTAACACCTATGCCATTTTGGC
1 CATTTTTCCCCCGACACTCATGATGTAACACATATGACATTTTGGC
950 C
1 C
951 CCCGACGCTC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.34
Consensus pattern (46 bp):
CATTTTTCCCCCGACACTCATGATGTAACACATATGACATTTTGGC
Found at i:1015 original size:254 final size:256
Alignment explanation
Indices: 565--1241 Score: 1099
Period size: 255 Copynumber: 2.6 Consensus size: 256
555 CACCTATGGA
* * *
565 ATTTTTTGCCCCCGACGCTCATAATGTAACACTTATGGCATTTTGGCCCCGACGCTCATGGTGTA
1 ATTTTTTGCCCCCGACGCTCATAATGTAACACCTATGTCATTTTTGCCCCGACGCTCATGGTGTA
*
630 ACACATTTGGCATTTTGGCCATTTTTTCCCCTGACGCTCATTATGTAACACCTATGGCATTTTGG
66 ACACATTTGGCATTTTGGCCATTTTTTCCCCCGACGCTCATTATGTAACACCTATGGCATTTTGG
* *
695 CCCCCGACGCTCATGATGTAACACCTATGGCATTTCGTCTCCCGACGCTCATGGTGTAACTCCTT
131 CCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCTGTAACTCCTT
* * *
760 TGGCGTTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAA-CTTTGGCATTTTAGCT
196 TGACGTTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATTTTAGCC
*
820 ATTTTTTGCCCCCGACGCTCATAATGTAACACCTATGTCATTTTTGCCCCGACACTCATGGTGTA
1 ATTTTTTGCCCCCGACGCTCATAATGTAACACCTATGTCATTTTTGCCCCGACGCTCATGGTGTA
* *
885 ACACATTTGACATTTTGGCCA-TTTTTCCCCCGACGCTCATTATGTAACACCTATGCCATTTTGG
66 ACACATTTGGCATTTTGGCCATTTTTTCCCCCGACGCTCATTATGTAACACCTATGGCATTTTGG
949 CCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCTGTAACTCCTT
131 CCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCTGTAACTCCTT
1014 TGACGTTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATTTTAGCC
196 TGACGTTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATTTTAGCC
*
1075 ATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTTTGCCCCGACGCGT-ATGGTGT
1 ATTTTTTGCCCCCGACGCTCATAATGTAACACCTATGTCATTTTTGCCCCGACGC-TCATGGTGT
* * * *
1139 AACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGCATTTT
65 AACACATTTGGCATTTTGGCCATTTTTT-CCCCCGACGCTCATTATGTAACACCTATGGCATTTT
* ** * * * *
1204 AGCTTCCGACACTCATGGTGTAACACCTTTAGCATTTT
129 GGCCCCCGACGCTCATGATGTAACACCTATGGCATTTT
1242 AGCCAGTTTT
Statistics
Matches: 391, Mismatches: 27, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
254 147 0.38
255 174 0.45
256 6 0.02
257 64 0.16
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (256 bp):
ATTTTTTGCCCCCGACGCTCATAATGTAACACCTATGTCATTTTTGCCCCGACGCTCATGGTGTA
ACACATTTGGCATTTTGGCCATTTTTTCCCCCGACGCTCATTATGTAACACCTATGGCATTTTGG
CCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCTGTAACTCCTT
TGACGTTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATTTTAGCC
Found at i:1127 original size:37 final size:38
Alignment explanation
Indices: 1077--1155 Score: 108
Period size: 37 Copynumber: 2.1 Consensus size: 38
1067 TTTTAGCCAT
*
1077 TTTTTGCCCCCGACGC-TCATGATGTAACACCTATGTCA
1 TTTTTGCCCCCGACGCGT-ATGATGTAACACCTATGGCA
* *
1115 TTTTTG-CCCCGACGCGTATGGTGTAACACCTTTGGCA
1 TTTTTGCCCCCGACGCGTATGATGTAACACCTATGGCA
1152 TTTT
1 TTTT
1156 AGCCATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 30 0.81
38 7 0.19
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (38 bp):
TTTTTGCCCCCGACGCGTATGATGTAACACCTATGGCA
Found at i:1177 original size:133 final size:133
Alignment explanation
Indices: 939--1182 Score: 359
Period size: 133 Copynumber: 1.8 Consensus size: 133
929 TAACACCTAT
939 GCCATTTTGGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCT
1 GCCATTTTGGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCT
* * * *
1004 GTAACTCCTTTGACGTTTTGGTCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATT
66 GTAACACCTTTGACATTTTAGCCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATT
1069 TTA
131 TTA
* *
1072 GCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTT-TGC-CCCGACGCGT-AT
1 GCCA-TTTTGGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGT-CTCCCGACGC-TCAT
* * *
1134 GGTGTAACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATG
63 GCTGTAACACCTTTGACATTTTAGCCATTTTTGGCCCCCGACGCTCATG
1183 ATGTAACACC
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
133 57 0.58
134 42 0.42
ACGTcount: A:0.17, C:0.30, G:0.20, T:0.34
Consensus pattern (133 bp):
GCCATTTTGGCCCCCGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGCT
GTAACACCTTTGACATTTTAGCCATTTTTGGCCCCCGACGCTCATGGTGGTTAACCTTTGACATT
TTA
Found at i:1479 original size:135 final size:134
Alignment explanation
Indices: 1142--1640 Score: 762
Period size: 135 Copynumber: 3.8 Consensus size: 134
1132 ATGGTGTAAC
* * *
1142 ACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGCATTTTAGC
1 ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTAGC
** * * *
1207 TTCCGACACTCATGGTGTAACACCTTTAGCATTTTAGCCAGTTTTGGCCCCCGACGCTCA---TG
66 ACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTG
1269 C---
131 CTTA
*
1270 -CCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGGC
1 ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTAGC
*
1334 ACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCCATTTTTGGCCCCCGACGCTCATGCTG
66 ACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTG
1399 CTTA
131 CTTA
* *
1403 ACCTTTGGCATTTTACGCCAATT-TTTGCCCCCGACGCTCATGATGTAACACTTATGGCATTTTA
1 ACCTTTGGCATTTTA-GCC-ATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTA
** *
1467 GCTTCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGC
64 GCACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGC
*
1532 TGGTTA
129 TGCTTA
*
1538 ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTGGC
1 ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTAGC
*
1603 ACCCGACGCTCATGATGTAACACCTTTGGCATTTTGGC
66 ACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGC
1641 TATTTCTTGC
Statistics
Matches: 336, Mismatches: 25, Indels: 14
0.90 0.07 0.04
Matches are distributed among these distances:
127 114 0.34
130 3 0.01
133 3 0.01
134 91 0.27
135 122 0.36
136 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.32
Consensus pattern (134 bp):
ACCTTTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACCTATGGCATTTTAGC
ACCCGACGCTCATGATGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTG
CTTA
Found at i:1747 original size:219 final size:216
Alignment explanation
Indices: 1375--2616 Score: 1194
Period size: 219 Copynumber: 5.7 Consensus size: 216
1365 TTTTGGCCAT
* * * *
1375 TTTTGGCCCCCGACGCTCATGCTGCTTA-ACCTTTGGCATTTTACGCCAA-TTTTTGCCCCCGAC
1 TTTTGGCACCCGACGCTCATGGTG-TAACACCTTTGGCATTTT--GGCAATTTTTTG-CCCCGAC
* * * *
1438 GCTCATGATGTAACACTTATGGCATTTTAGCTTCCGACGCTCATGGTGTAACACCTTTAGCATTT
62 GCTCATTATGTAACACCTATGGCATTTTGGCTACCGACGCTCATGGTGTAACACCTTTAGCATTT
1503 TGGCCAGTTTTGGCCCCCGACGCTCATGCTGGTTAACCTTTGGCATTTTAGCCATTCTTTGCCCC
127 T-GCCAGTTTTGGCCCCCGACGCTCATGCT-GTTAACCTTTGGCATTTTAGCCATT-TTTGCCCC
*
1568 CGACGCTAATGATGTAACACCTATGGCA
189 CGACGCTAATTATGTAACACCTATGGCA
* * * *
1596 TTTTGGCACCCGACGCTCATGATGTAACACCTTTGGCATTTTGGCTATTTCTTGCTCTCGACGCT
1 TTTTGGCACCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCAATTTTTTGC-CCCGACGCT
* *
1661 CATTATGTAACATCTATGGCATTTTGGC-ACCAACGCTCATGGTGTAACACCTTTAGCATTTTGA
65 CATTATGTAACACCTATGGCATTTTGGCTACCGACGCTCATGGTGTAACACCTTTAGCATTTTG-
* * * *
1725 CCTGTTTTGGCCCCCGACGCTCATGCTAGTTTACCTTTGGCATTTTCGCCACTTTTTGCCCCCGG
129 CCAGTTTTGGCCCCCGACGCTCATGCT-GTTAACCTTTGGCATTTTAGCCA-TTTTTGCCCCCGA
1790 CGCTAATTATGTAA-ATCCTATGGCA
192 CGCTAATTATGTAACA-CCTATGGCA
* * * * * *
1815 TTTTGGGACCCGACGCTCATGATATAACACCTTTGTCATTTTAGCCATTTTTTGCCCCCGACGCT
1 TTTTGGCACCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCAATTTTTTG-CCCCGACGCT
* * * *
1880 CATGATGTAACACCTAAT-GCATTTTAGCTTCCGATGCTCATGGTGTAACACCTTTAGCATTTTG
65 CATTATGTAACACCT-ATGGCATTTTGGCTACCGACGCTCATGGTGTAACACCTTTAGCATTTT-
*
1944 GCCAGTTTTGGACCCCCGACGCTCATGCTAGTTAACCTTTGGCATTTTAGCCATTTTTTTACCCC
128 GCCAGTTTTGG-CCCCCGACGCTCATGCT-GTTAACCTTTGGCATTTTAGCCA--TTTTTGCCCC
* *
2009 CGACGC-ATATGATGTAACACCTATGGTA
189 CGACGCTA-ATTATGTAACACCTATGGCA
* *
2037 TTTTGGC-CCACGACGCTCATGGTGTAACACCTTTGGCATTTTGGCTATTTTTTTCCCCGACGCT
1 TTTTGGCACC-CGACGCTCATGGTGTAACACCTTTGGCATTTTGGCAATTTTTTGCCCCGACGCT
* * *
2101 CATTATGTAAAACCTATGGCATTTTGGC-GCACGACGCTCATGATGTAACACC--T---A---TG
65 CATTATGTAACACCTATGGCATTTTGGCTAC-CGACGCTCATGGTGTAACACCTTTAGCATTTTG
* * * * * * * * *
2157 GCA-TTTTGTCTCCCGACGCTCATGATGTTACACCTCTGGCATATTGGCTATTTTTTGCTCCCGA
129 CCAGTTTTGGCCCCCGACGCTCATGCTGTTA-ACCTTTGGCATTTTAGCCA-TTTTTGCCCCCGA
* * *
2221 CGCTCATTATGTAAGACCTATGCCA
192 CGCTAATTATGTAACACCTATGGCA
* * *
2246 TTTTGGCA-CCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGGCCCCTGACGCT
1 TTTTGGCACCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCAATTTTTTGCCCC-GACGCT
* * * *
2310 CATGCTA-GTTA-ACCTTTGGCATTTTAGCCATTCTTTACCCCCGACGCAT-ATGATGTAACACC
65 CAT--TATGTAACACCTATGGCATTTT-G----GC--TA---CCGACGC-TCATGGTGTAACACC
* * * ** *
2372 --T---A---TGGCA-TTTTGGCCCCCGACGCTCATGGTGTAATACCTTTGGCATTTGGGTCATT
117 TTTAGCATTTTGCCAGTTTTGGCCCCCGACGCTCATGCTGTTA-ACCTTTGGCATTTTAGCCATT
* *
2428 TTTTCCCCCGACGCTAATTATGTAACACCTATGGTA
181 TTTGCCCCCGACGCTAATTATGTAACACCTATGGCA
* * * * * *
2464 TTTTGGCCCCCGACGCTTATGGTGTAACACCTTTGACATTTTAGCCATTTTTTGCCTCCAACGCT
1 TTTTGGCACCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCAATTTTTTGCC-CCGACGCT
* * * * * * * *
2529 CATTATGTAACACCTACGACATTTTAGCCACTGACGCTCATGGTGTATCAGCTTTAACATTTTAG
65 CATTATGTAACACCTATGGCATTTTGGCTACCGACGCTCATGGTGTAACACCTTTAGCATTTT-G
*
2594 CCAGTTTTTGCCCCCGACGCTCA
129 CCAGTTTTGGCCCCCGACGCTCA
Statistics
Matches: 856, Mismatches: 115, Indels: 102
0.80 0.11 0.10
Matches are distributed among these distances:
208 44 0.05
209 81 0.09
210 34 0.04
211 8 0.01
212 4 0.00
213 1 0.00
214 3 0.00
216 1 0.00
217 3 0.00
218 47 0.05
219 334 0.39
220 91 0.11
221 130 0.15
222 74 0.09
223 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.34
Consensus pattern (216 bp):
TTTTGGCACCCGACGCTCATGGTGTAACACCTTTGGCATTTTGGCAATTTTTTGCCCCGACGCTC
ATTATGTAACACCTATGGCATTTTGGCTACCGACGCTCATGGTGTAACACCTTTAGCATTTTGCC
AGTTTTGGCCCCCGACGCTCATGCTGTTAACCTTTGGCATTTTAGCCATTTTTGCCCCCGACGCT
AATTATGTAACACCTATGGCA
Found at i:1765 original size:133 final size:134
Alignment explanation
Indices: 1596--1894 Score: 360
Period size: 133 Copynumber: 2.2 Consensus size: 134
1586 ACCTATGGCA
* * * * *
1596 TTTTGGCACCCGACGCTCATGATGTAACACCTTTGGCATTTTGGCTA-TTTCTTGCTCTCGACGC
1 TTTTGGCCCCCGACGCTCATGATGTAACACCTTTGGCATTTTCGCCACTTT-TTGCCCCCGACGC
* * *
1660 TCATTATGTAACAT-CTATGGCATTTTGGCA-CCAACGCTCATGGTGTAACACCTTTAG-CATTT
65 TAATTATGTAA-ATCCTATGGCATTTTGGCACCCAACGCTCATGATATAACACCTTT-GTCATTT
1722 T-GACC-T
128 TAG-CCAT
* ** *
1728 GTTTTGGCCCCCGACGCTCATGCTAGT-TTACCTTTGGCATTTTCGCCACTTTTTGCCCCCGGCG
1 -TTTTGGCCCCCGACGCTCATGAT-GTAACACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACG
* *
1792 CTAATTATGTAAATCCTATGGCATTTTGGGACCCGACGCTCATGATATAACACCTTTGTCATTTT
64 CTAATTATGTAAATCCTATGGCATTTTGGCACCCAACGCTCATGATATAACACCTTTGTCATTTT
1857 AGCCAT
129 AGCCAT
*
1863 TTTTTGCCCCCGACGCTCATGATGTAACACCT
1 TTTTGGCCCCCGACGCTCATGATGTAACACCT
1895 AATGCATTTT
Statistics
Matches: 140, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
132 2 0.01
133 76 0.54
134 60 0.43
135 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (134 bp):
TTTTGGCCCCCGACGCTCATGATGTAACACCTTTGGCATTTTCGCCACTTTTTGCCCCCGACGCT
AATTATGTAAATCCTATGGCATTTTGGCACCCAACGCTCATGATATAACACCTTTGTCATTTTAG
CCAT
Found at i:2066 original size:136 final size:135
Alignment explanation
Indices: 1823--2125 Score: 366
Period size: 136 Copynumber: 2.3 Consensus size: 135
1813 CATTTTGGGA
* *
1823 CCCGACGCTCATGATATAACACCTTTGTCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGT
1 CCCGACGCTCATGATATAACACCTTTGGCATTTTAGCCATTTTTTACCCCCGACGCTCATGATGT
* *
1888 AACACCTAATGCATTTTAGCTTCCGATGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTT
66 AACACCTAATGCATTTTAGCTCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTT
1953 GGACC
131 GGACC
* *
1958 CCCGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTTTTTTACCCCCGACGCAT-ATGA
1 CCCGACGCTCATGATA-TAACACCTTTGGCATTTTAGCCA-TTTTTTACCCCCGACGC-TCATGA
* * * *
2021 TGTAACACCT-ATGGTATTTTGGC-CCACGACGCTCATGGTGTAACACCTTTGGCATTTTGGCTA
63 TGTAACACCTAAT-GCATTTTAGCTCC-CGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCA
***
2084 -TTTT-TTTC
126 GTTTTGGACC
* * * *
2092 CCCGACGCTCATTATGTAAAACCTATGGCATTTT
1 CCCGACGCTCATGATATAACACCTTTGGCATTTT
2126 GGCGCACGAC
Statistics
Matches: 144, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
133 2 0.01
134 27 0.19
135 40 0.28
136 74 0.51
137 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (135 bp):
CCCGACGCTCATGATATAACACCTTTGGCATTTTAGCCATTTTTTACCCCCGACGCTCATGATGT
AACACCTAATGCATTTTAGCTCCCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTT
GGACC
Found at i:2125 original size:85 final size:85
Alignment explanation
Indices: 1949--2616 Score: 434
Period size: 85 Copynumber: 7.8 Consensus size: 85
1939 TTTTGGCCAG
* * *
1949 TTTTGGACCCCCGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTTTTTTACCCCCGAC
1 TTTTGG-CCCACGACGCTCATGGT-GTAACACCTTTGGCATTTTAGCCA-TTTTTT-CCCCCGAC
*
2013 GCAT-ATGATGTAACACCTATGGTA
62 GC-TCATGATGTAACACCTATGGCA
* * *
2037 TTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTGGCTATTTTTTTCCCCGACGCTC
1 TTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
* *
2102 ATTATGTAAAACCTATGGCA
66 ATGATGTAACACCTATGGCA
* * * *
2122 TTTTGGCGCACGACGCTCATGATGTAACACCTATGGCATTTT-G--------TCTCCCGACGCTC
1 TTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
*
2178 ATGATGTTACACCTCTGGCATATTGGCTA
66 ATGATG-TA-A-CAC---C-TA-TGGC-A
* ** * ** *
2207 TTTTTTGCTCC-CGACGCTCATTATGTAAGACC--T---A---T-GCCA-TTTTGGCACCGACGC
1 -TTTTGGC-CCACGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGC
*
2261 TCATGGTGTAACACCTTTAGCATTTTGGCAA
64 TCATGATGTAACACC--T---A---TGGC-A
* * *
2292 GTTTTGGCCC-CTGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTCTTTACCCCCGAC
1 -TTTTGGCCCAC-GACGCTCATGGT-GTAACACCTTTGGCATTTTAGCCATT-TTTTCCCCCGAC
2355 GCAT-ATGATGTAACACCTATGGCA
62 GC-TCATGATGTAACACCTATGGCA
* * ** * *
2379 TTTTGGCCCCCGACGCTCATGGTGTAATACCTTTGGCATTTGGGTCATTTTTTCCCCCGACGCTA
1 TTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
* *
2444 ATTATGTAACACCTATGGTA
66 ATGATGTAACACCTATGGCA
* * * * *
2464 TTTTGGCCCCCGACGCTTATGGTGTAACACCTTTGACATTTTAGCCATTTTTTGCCTCCAACGCT
1 TTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTT-CCCCCGACGCT
* * *
2529 CATTATGTAACACCTACGACA
65 CATGATGTAACACCTATGGCA
* * * ** *
2550 TTTTAG-CCACTGACGCTCATGGTGTATCAGCTTTAACATTTTAGCCAGTTTTTGCCCCCGACGC
1 TTTTGGCCCAC-GACGCTCATGGTGTAACACCTTTGGCATTTTAGCCA-TTTTTTCCCCCGACGC
2614 TCA
64 TCA
Statistics
Matches: 467, Mismatches: 67, Indels: 94
0.74 0.11 0.15
Matches are distributed among these distances:
76 16 0.03
77 2 0.00
78 3 0.01
79 2 0.00
80 1 0.00
81 1 0.00
82 3 0.01
83 4 0.01
84 13 0.03
85 189 0.40
86 149 0.32
87 41 0.09
88 10 0.02
90 1 0.00
91 1 0.00
93 1 0.00
94 5 0.01
95 1 0.00
96 23 0.05
97 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (85 bp):
TTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTAGCCATTTTTTCCCCCGACGCTC
ATGATGTAACACCTATGGCA
Found at i:2252 original size:48 final size:49
Alignment explanation
Indices: 2160--2252 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 49
2150 ACCTATGGCA
* * *
2160 TTTTGTCTCCCGACGCTCATGATGTTACACCTCTGGCATATTGGCTATT
1 TTTTGTCTCCCGACGCTCATGATGTAACACCTATGCCATATTGGCTATT
* * *
2209 TTTTG-CTCCCGACGCTCATTATGTAAGACCTATGCCATTTTGGC
1 TTTTGTCTCCCGACGCTCATGATGTAACACCTATGCCATATTGGC
2253 ACCGACGCTC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
48 33 0.87
49 5 0.13
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.38
Consensus pattern (49 bp):
TTTTGTCTCCCGACGCTCATGATGTAACACCTATGCCATATTGGCTATT
Found at i:2258 original size:37 final size:37
Alignment explanation
Indices: 2217--2290 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
2207 TTTTTTGCTC
* *
2217 CCGACGCTCATTATGTAAGACCTAT-GCCATTTTGGCA
1 CCGACGCTCATGATGTAACACCTATAG-CATTTTGGCA
* *
2254 CCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCA
1 CCGACGCTCATGATGTAACACCTATAGCATTTTGGCA
2291 AGTTTTGGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 31 0.97
38 1 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (37 bp):
CCGACGCTCATGATGTAACACCTATAGCATTTTGGCA
Found at i:2394 original size:86 final size:85
Alignment explanation
Indices: 2293--2614 Score: 360
Period size: 86 Copynumber: 3.8 Consensus size: 85
2283 TTTTGGCAAG
* * * * *
2293 TTTTGGCCCCTGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTCTTTACCCCCGACGC
1 TTTTGGCCCCCGACGCTCATGGT-GTAACACCTTTGACATTTTAGCCATT-TTTGCCCCCGACGC
*
2357 -ATATGATGTAACACCTATGGCA
64 TA-ATTATGTAACACCTATGGCA
* * ** * *
2379 TTTTGGCCCCCGACGCTCATGGTGTAATACCTTTGGCATTTGGGTCATTTTTTCCCCCGACGCTA
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGACATTTTAGCCATTTTTGCCCCCGACGCTA
*
2444 ATTATGTAACACCTATGGTA
66 ATTATGTAACACCTATGGCA
* * *
2464 TTTTGGCCCCCGACGCTTATGGTGTAACACCTTTGACATTTTAGCCATTTTTTGCCTCCAACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGACATTTTAGCCA-TTTTTGCCCCCGACGCT
* * *
2529 CATTATGTAACACCTACGACA
65 AATTATGTAACACCTATGGCA
* * * * * *
2550 TTTTAGCCACTGACGCTCATGGTGTATCAGCTTTAACATTTTAGCCAGTTTTTGCCCCCGACGCT
1 TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGACATTTTAGCCA-TTTTTGCCCCCGACGCT
2615 CA
Statistics
Matches: 201, Mismatches: 32, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
85 75 0.37
86 126 0.63
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (85 bp):
TTTTGGCCCCCGACGCTCATGGTGTAACACCTTTGACATTTTAGCCATTTTTGCCCCCGACGCTA
ATTATGTAACACCTATGGCA
Found at i:2405 original size:38 final size:37
Alignment explanation
Indices: 2347--2505 Score: 120
Period size: 38 Copynumber: 3.9 Consensus size: 37
2337 CCATTCTTTA
2347 CCCCCGACGCATATGATGTAACACCTATGGCATTTTGG
1 CCCCCGACGC-TATGATGTAACACCTATGGCATTTTGG
* * **
2385 CCCCCGACGCTCATGGTGTAATACCTTTGGCATTTGGGTCATTTTTT
1 CCCCCGACGCT-ATGATGTAACACC--T---A--T-GG-CATTTTGG
* *
2432 CCCCCGACGCTAATTATGTAACACCTATGGTATTTTGG
1 CCCCCGACGCT-ATGATGTAACACCTATGGCATTTTGG
* * *
2470 CCCCCGACGCTTATGGTGTAACACCTTTGACATTTT
1 CCCCCGACGC-TATGATGTAACACCTATGGCATTTT
2506 AGCCATTTTT
Statistics
Matches: 94, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
37 1 0.01
38 55 0.59
39 3 0.03
40 2 0.02
42 1 0.01
43 1 0.01
45 2 0.02
46 2 0.02
47 27 0.29
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (37 bp):
CCCCCGACGCTATGATGTAACACCTATGGCATTTTGG
Found at i:2441 original size:133 final size:131
Alignment explanation
Indices: 2036--2457 Score: 371
Period size: 133 Copynumber: 3.3 Consensus size: 131
2026 CACCTATGGT
* * * * * * * * **
2036 ATTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTGGCTATT-TTTTTCCCCGACGC
1 ATTTTGTCCCCCGACGCTCATGATGTTACACCTCTGGCATATTAGCCATTCTTTACCCCCGACGC
* * * * *
2100 TCATTATGTAAAACCTATGGCATTTTGGCGCACGACGCTCATGATGTAACACC--T---A--T-G
66 TCATGATGTAACACCTATGCCATTTTGGCAC-CGACGCTCATGGTGTAACACCTTTAGCATTTGG
2157 GC
130 GC
* * * * * *
2159 ATTTTGTCTCCCGACGCTCATGATGTTACACCTCTGGCATATTGGCTATTTTTTGCTCCCGACGC
1 ATTTTGTCCCCCGACGCTCATGATGTTACACCTCTGGCATATTAGCCATTCTTTACCCCCGACGC
* * *
2224 TCATTATGTAAGACCTATGCCATTTTGGCACCGACGCTCATGGTGTAACACCTTTAGCATTTTGG
66 TCATGATGTAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAACACCTTTAGCATTTGGG
2289 C
131 C
* * * * *
2290 AAGTTTTGGCCCCTGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTCTTTACCCCCGA
1 -A-TTTTGTCCCCCGACGCTCATGAT-GTTACACCTCTGGCATATTAGCCATTCTTTACCCCCGA
* * * *
2354 CGCAT-ATGATGTAACACCTATGGCATTTTGGCCCCCGACGCTCATGGTGTAATACCTTTGGCAT
63 CGC-TCATGATGTAACACCTATGCCATTTTGG-CACCGACGCTCATGGTGTAACACCTTTAGCAT
2418 TTGGGTC
126 TTGGG-C
* * * *
2425 ATTTTTTCCCCCGACGCTAATTATGTAACACCT
1 ATTTTGTCCCCCGACGCTCATGATGTTACACCT
2458 ATGGTATTTT
Statistics
Matches: 244, Mismatches: 39, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
123 63 0.26
124 39 0.16
125 1 0.00
128 1 0.00
130 1 0.00
131 3 0.01
132 4 0.02
133 92 0.38
134 39 0.16
135 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (131 bp):
ATTTTGTCCCCCGACGCTCATGATGTTACACCTCTGGCATATTAGCCATTCTTTACCCCCGACGC
TCATGATGTAACACCTATGCCATTTTGGCACCGACGCTCATGGTGTAACACCTTTAGCATTTGGG
C
Found at i:2569 original size:342 final size:339
Alignment explanation
Indices: 1077--2505 Score: 962
Period size: 342 Copynumber: 4.1 Consensus size: 339
1067 TTTTAGCCAT
* * * * *
1077 TTTTTGCCCCCGACGCTCATGATGTAACACCTATGTCATTTT-TGC-CCCGACGCGT-ATGGTGT
1 TTTTGGCCCACGACGCTCATGATGTAACACCTATGACATTTTGT-CTCCCAACGC-TCATGATGT
* * * * **
1139 AACACCTTTGGCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTACGGCATTTT
64 AACACC-TCGG-A----AGCTATTTTTAGCTCCCGACGCTCATGATGTAACACCTAATGCATTTT
* * * *
1204 AGCTTCCGACACTCATGGTGTAACACCTTTAGCATTTTAGCCAGTTTTGG-CCCCCGACGCTCAT
123 AGCTACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGGACCCCCGACGCTCAT
*
1268 GC-------CCTTTGGCATTTTAGCCA-TTCTTTGCCCCCGACGC-TAATGATGTAACACCTATG
188 GCTAGTTAACCTTTGGCATTTTAGCCATTTCTTTACCCCCGACGCAT-ATGATGTAACACCTATG
* * * * *
1324 GCATTTTGGCACC-CGACGCTCATGATGTAACACCTTTAGCATTTTGGCCATTTTTGGCCCCCGA
252 GCATTTTGGC-CCACGACGCTCATGGTGTAACACCTTTGGCATTTGGGCTATTTTT-TCCCCCGA
* ** * *
1388 CGCTCATGCTGCT-TAACCTTTGGCA
315 CGCTAATTATG-TAAAACCTATGGCA
* * * * *
1413 TTTTACGCCAATTTTTGCCCCCGACGCTCATGATGTAACACTTATGGCATTTTAG-CTTCCGACG
1 TTTT--G---------GCCCACGACGCTCATGATGTAACACCTATGACATTTT-GTCTCCCAACG
* * * * * * * * * *
1477 CTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGCCCCCGACGCTCATGCTGGTTA-ACC
54 CTCATGATGTAACACC--TCGGA----AGCTATTTTTAGCTCCCGACGCTCATGAT-GTAACACC
* * * *
1541 T-TTGGCATTTTAGCCATTCTTTGCCCCCGACGCTAATGATGTAACACC--T---A---TGGC-A
112 TAAT-GCATTTTAG-----C--T---ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAA
* * * * * * * *
1596 -TTTTGG-CACCCGACGCTCATGAT-GTAACACCTTTGGCATTTTGGCTATTTC-TTGCTCTCGA
166 GTTTTGGACCCCCGACGCTCATGCTAGTTA-ACCTTTGGCATTTTAGCCATTTCTTTACCCCCGA
* * *
1657 CGC-TCATTATGTAACATCTATGGCATTTTGGCACCA--ACGCTCATGGTGTAACACCTTTAGCA
230 CGCAT-ATGATGTAACACCTATGGCATTTTGGC-CCACGACGCTCATGGTGTAACACCTTTGGCA
** * ** * ** *
1719 TTTTGACCTGTTTTGGCCCCCGACGCTCATGCTA-GT-TTACCTTTGGCA
293 -TTTGGGCTATTTTTTCCCCCGACGCTAAT--TATGTAAAACCTATGGCA
* * * * * *** *
1767 TTTTCGCCACTTTTTGCCCCCGGCGCTAATTATGTAA-ATCCTATGGCATTTTGGGACCCGACGC
1 TTTT-G---------GCCCACGACGCTCATGATGTAACA-CCTATGACATTTTGTCTCCCAACGC
* * * * * *
1831 TCATGATATAACACCTTTGTCATTTTAGCCATTTTTTGCCCCCGACGCTCATGATGTAACACCTA
55 TCATGATGTAACACC-TCG-GA----AGCTATTTTTAGCTCCCGACGCTCATGATGTAACACCTA
* * *
1896 ATGCATTTTAGCTTCCGATGCTCATGGTGTAACACCTTTAGCATTTTGGCCAGTTTTGGACCCCC
114 ATGCATTTTAGCTACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGGACCCCC
*
1961 GACGCTCATGCTAGTTAACCTTTGGCATTTTAGCCATTTTTTTACCCCCGACGCATATGATGTAA
179 GACGCTCATGCTAGTTAACCTTTGGCATTTTAGCCATTTCTTTACCCCCGACGCATATGATGTAA
* * *
2026 CACCTATGGTATTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTTGGCTATTTTTTT
244 CACCTATGGCATTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTGGGCTATTTTTTC
*
2091 CCCCGACGCTCATTATGTAAAACCTATGGCA
309 CCCCGACGCTAATTATGTAAAACCTATGGCA
* * * *
2122 TTTTGGCGCACGACGCTCATGATGTAACACCTATGGCATTTTGTCTCCCGACGCTCATGATGTTA
1 TTTTGGCCCACGACGCTCATGATGTAACACCTATGACATTTTGTCTCCCAACGCTCATGATGTAA
* * * *
2187 CACCTCTGGCATATTGGCTATTTTTTGCTCCCGACGCTCATTATGTAAGACCT-ATGCCATTTTG
66 CACCTC-GG-A-A---GCTATTTTTAGCTCCCGACGCTCATGATGTAACACCTAATG-CATTTTA
*
2251 GC-ACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGG-CCCCTGACGCTCATG
124 GCTACCGACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGGACCCCCGACGCTCATG
2314 CTAGTTAACCTTTGGCATTTTAGCCA-TTCTTTACCCCCGACGCATATGATGTAACACCTATGGC
189 CTAGTTAACCTTTGGCATTTTAGCCATTTCTTTACCCCCGACGCATATGATGTAACACCTATGGC
* *
2378 ATTTTGGCCCCCGACGCTCATGGTGTAATACCTTTGGCATTTGGG-TCATTTTTTCCCCCGACGC
254 ATTTTGGCCCACGACGCTCATGGTGTAACACCTTTGGCATTTGGGCT-ATTTTTTCCCCCGACGC
* *
2442 TAATTATGTAACACCTATGGTA
318 TAATTATGTAAAACCTATGGCA
* * * *
2464 TTTTGGCCCCCGACGCTTATGGTGTAACACCTTTGACATTTT
1 TTTTGGCCCACGACGCTCATGATGTAACACCTATGACATTTT
2506 AGCCATTTTT
Statistics
Matches: 905, Mismatches: 117, Indels: 136
0.78 0.10 0.12
Matches are distributed among these distances:
336 4 0.00
341 1 0.00
342 151 0.17
343 59 0.07
344 47 0.05
345 96 0.11
346 2 0.00
347 37 0.04
348 85 0.09
349 7 0.01
350 3 0.00
351 4 0.00
352 9 0.01
353 115 0.13
354 98 0.11
355 138 0.15
356 30 0.03
358 19 0.02
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.34
Consensus pattern (339 bp):
TTTTGGCCCACGACGCTCATGATGTAACACCTATGACATTTTGTCTCCCAACGCTCATGATGTAA
CACCTCGGAAGCTATTTTTAGCTCCCGACGCTCATGATGTAACACCTAATGCATTTTAGCTACCG
ACGCTCATGGTGTAACACCTTTAGCATTTTGGCAAGTTTTGGACCCCCGACGCTCATGCTAGTTA
ACCTTTGGCATTTTAGCCATTTCTTTACCCCCGACGCATATGATGTAACACCTATGGCATTTTGG
CCCACGACGCTCATGGTGTAACACCTTTGGCATTTGGGCTATTTTTTCCCCCGACGCTAATTATG
TAAAACCTATGGCA
Done.