Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014064.1 Corchorus olitorius cultivar O-4 contig14097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17615

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2284--2325
19
2.2
19
86
0
57
61
19
7
11
1.52
4516--4545
2
15.0
2
92
0
51
46
0
0
53
1.00
8196--8253
26
2.3
25
81
3
62
18
6
18
55
1.65
15285--15379
50
1.9
50
88
0
145
34
14
7
43
1.74
15418--16304
399
2.2
399
87
2
1244
34
19
13
32
1.90
15415--16304
199
4.5
199
88
1
1248
34
19
13
32
1.90
16652--16711
10
5.9
10
84
11
61
43
0
1
55
1.10
16652--16711
17
3.5
17
90
4
86
43
0
1
55
1.10
16649--16709
24
2.6
23
92
7
104
42
0
1
55
1.09
16674--16764
10
9.7
10
73
15
61
53
1
0
45
1.07
16696--16773
29
2.9
25
83
9
84
61
1
0
37
1.04
16703--16760
22
2.7
21
80
17
73
60
1
0
37
1.07
16665--16758
7
13.3
7
79
14
77
52
1
0
46
1.07
16724--16772
25
2.0
25
91
0
80
65
0
0
34
0.93
16838--16862
13
1.9
13
100
0
50
40
20
8
32
1.81
16867--16891
12
2.1
12
100
0
50
24
20
16
40
1.91

Tables:   1

The End!