Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014066.1 Corchorus olitorius cultivar O-4 contig14099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28


Found at i:437 original size:15 final size:15

Alignment explanation


    Indices: 417--450  Score: 68
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        407 ATTGGGGGAT

                           
        417 AATCAATCCAAAAAC
          1 AATCAATCCAAAAAC

                           
        432 AATCAATCCAAAAAC
          1 AATCAATCCAAAAAC

                
        447 AATC
          1 AATC

        451 CAACAACAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15


Consensus pattern (15 bp):   
AATCAATCCAAAAAC
Done.