Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014073.1 Corchorus olitorius cultivar O-4 contig14106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45878

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6753--7078
50
6.5
50
92
2
537
37
11
26
25
1.89
6753--7078
151
2.2
150
92
1
537
37
11
26
25
1.89
7320--7392
27
2.7
27
93
0
119
16
16
28
38
1.90
12401--12437
2
18.5
2
100
0
74
0
51
0
48
1.00
18932--18972
21
2.0
21
100
0
82
43
24
4
26
1.74
19110--19192
42
2.0
42
88
4
123
33
7
18
40
1.78
20525--20566
14
3.2
13
83
12
50
23
0
2
73
0.94
20601--20642
10
4.4
10
82
11
52
35
2
7
54
1.41
20919--20953
18
1.9
18
94
0
61
28
11
42
17
1.83
20919--20961
18
2.4
18
88
0
59
27
13
44
13
1.83
22774--22869
41
2.3
41
89
0
138
44
16
14
23
1.85
24984--25028
21
2.1
21
87
0
63
13
22
33
31
1.92
26041--26092
26
2.0
27
84
3
70
15
21
11
51
1.74
28488--28537
21
2.3
20
80
12
55
40
0
28
32
1.57
30837--30885
21
2.3
21
82
6
55
14
28
16
40
1.87
31967--32019
27
2.0
27
88
7
81
77
5
9
7
1.12
33590--33733
76
1.9
76
80
11
170
15
29
30
24
1.96
45660--45684
7
3.6
7
100
0
50
0
36
0
64
0.94

Tables:   1

The End!