Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014081.1 Corchorus olitorius cultivar O-4 contig14114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34653

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--875
332
2.6
332
85
4
1059
36
16
15
32
1.89
959--3529
334
7.8
331
85
5
3311
36
17
15
31
1.91
195--1782
836
1.9
832
83
5
2096
35
17
15
30
1.91
959--3529
656
3.9
653
87
5
3608
36
17
15
31
1.91
6673--6702
16
1.9
15
93
6
51
40
6
0
53
1.27
12624--12704
28
2.5
33
79
15
82
44
24
14
16
1.85
14158--14389
48
4.7
50
83
8
264
29
19
3
47
1.67
14158--14366
98
2.1
96
84
7
260
30
19
4
46
1.69
23941--23975
14
2.6
13
91
8
61
0
22
0
77
0.78
30097--30233
69
2.0
69
100
0
274
12
24
18
43
1.85
30741--30770
15
2.0
15
93
0
51
26
23
26
23
2.00
30808--30850
21
2.0
21
91
8
70
9
27
23
39
1.85
34028--34089
31
2.0
31
100
0
124
22
16
48
12
1.80

Tables:   1

The End!