Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014091.1 Corchorus olitorius cultivar O-4 contig14124, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79444

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
816--870
22
2.5
22
85
5
67
20
21
16
41
1.90
12932--12956
2
12.5
2
100
0
50
0
0
52
48
1.00
13690--13722
16
2.0
17
94
5
59
21
0
0
78
0.75
15490--15528
19
1.9
19
85
10
51
5
5
28
61
1.39
19768--19792
2
12.5
2
100
0
50
48
0
0
52
1.00
25473--25513
21
2.0
21
100
0
82
58
4
14
21
1.55
27975--28012
14
2.8
14
88
4
60
57
2
2
36
1.26
28729--28755
1
27.0
1
100
0
54
100
0
0
0
0.00
30415--30595
4
45.8
4
82
5
127
42
0
10
46
1.38
30423--30595
46
3.7
46
80
11
181
42
0
10
46
1.39
30411--30562
50
3.0
51
91
4
256
44
0
9
46
1.37
30417--30559
26
5.7
26
85
6
204
43
0
10
46
1.38
30415--30587
50
3.5
50
88
4
242
42
0
10
46
1.39
31447--31513
27
2.5
27
97
0
125
34
10
10
44
1.73
39250--39310
14
4.4
14
76
15
65
81
14
0
3
0.80
39245--39310
11
5.7
12
81
13
68
81
15
0
3
0.80
39245--39310
19
3.7
18
84
9
91
81
15
0
3
0.80
39248--39306
8
6.9
8
78
14
64
83
13
0
3
0.78
41517--41546
2
15.0
2
100
0
60
50
0
0
50
1.00
57226--57332
55
2.0
53
85
7
144
41
11
16
30
1.84
57978--58005
1
28.0
1
100
0
56
100
0
0
0
0.00
59992--60038
17
2.7
18
87
9
71
6
2
29
61
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60063--60143
32
2.5
32
78
4
83
27
16
19
37
1.93
60641--60669
14
2.0
15
93
6
51
55
3
13
27
1.55
60847--60871
13
1.9
13
100
0
50
0
16
24
60
1.36
66421--66456
11
3.2
12
88
11
58
8
16
5
69
1.33
67203--67241
16
2.4
17
83
12
55
25
0
12
61
1.31
69714--69763
22
2.3
21
80
10
55
40
10
4
46
1.56
73772--73902
21
6.2
21
91
1
210
24
28
19
28
1.98

Tables:   1

The End!