Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014092.1 Corchorus olitorius cultivar O-4 contig14125, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21923

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
542--571
14
2.1
14
100
0
60
33
6
13
46
1.69
7952--8118
54
3.2
53
63
15
141
35
16
22
25
1.94
7927--8135
101
2.1
101
100
0
418
36
14
22
25
1.93
9224--9273
26
1.9
26
95
0
91
14
0
40
46
1.44
9767--9837
2
35.5
2
94
0
124
0
0
47
52
1.00
15698--16165
49
9.6
49
91
1
717
16
23
22
37
1.93
16273--16429
47
3.3
47
78
9
167
24
28
14
32
1.95
16039--16664
94
6.7
92
73
10
344
19
26
18
35
1.95
15744--16680
49
19.7
46
81
6
405
18
25
20
36
1.94
16428--16706
141
2.0
142
80
2
319
19
25
19
35
1.96
19760--19806
16
3.1
15
88
11
62
63
17
6
12
1.48

Tables:   1

The End!