Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014095.1 Corchorus olitorius cultivar O-4 contig14128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5057
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:3162 original size:16 final size:18

Alignment explanation


    Indices: 3136--3168  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       3126 AGTGCAAATT

                              
       3136 AAAATAG-AAAAATAAAG
          1 AAAATAGAAAAAATAAAG

                             
       3153 AAAA-AGAAAAAATAAA
          1 AAAATAGAAAAAATAAA

       3169 ACGCAATTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    2  0.13
  17   13  0.87

ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09


Consensus pattern (18 bp):   
AAAATAGAAAAAATAAAG

Found at i:3398 original size:12 final size:13

Alignment explanation


    Indices: 3376--3405  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       3366 ACCAGCAATT

                         
       3376 AAAATCAATCAAG
          1 AAAATCAATCAAG

                         
       3389 AAAA-CAATCAAG
          1 AAAATCAATCAAG

                 
       3401 AAAAT
          1 AAAAT

       3406 TAAAGAAAAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13


Consensus pattern (13 bp):   
AAAATCAATCAAG
Done.