genome.fa.s14097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014097.1 Corchorus olitorius cultivar O-4 contig14130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58648

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2696--2739	22	2.0	22	95	0	79	45	13	11	29	1.79
3036--3124	46	1.9	46	93	4	153	35	21	13	29	1.91
3089--3288	79	2.5	79	95	0	355	32	25	16	26	1.96
3344--3828	54	9.1	53	84	4	534	33	21	16	29	1.95
3837--4012	24	7.4	24	78	6	151	42	5	21	31	1.76
3898--4040	8	18.5	8	66	12	75	42	4	22	30	1.74
4071--4479	96	4.2	96	82	1	471	37	22	21	18	1.94
4097--4196	35	2.8	36	78	4	105	38	21	22	19	1.94
4299--4489	35	5.7	35	67	21	95	38	22	20	18	1.94
4357--4413	25	2.3	25	87	0	78	38	29	19	12	1.88
4322--4445	60	2.1	60	81	6	144	37	24	20	17	1.93
4071--4475	193	2.1	193	83	3	505	37	21	21	18	1.94
4381--4479	35	2.8	36	79	3	110	40	25	19	15	1.90
5670--5702	11	3.1	11	86	4	50	6	15	0	78	0.93
8912--8955	7	6.7	7	82	17	51	40	2	0	56	1.11
8917--8953	17	2.2	16	90	4	56	43	0	0	56	0.99
10063--10101	18	2.2	18	100	0	78	23	5	38	33	1.77
10063--10110	18	2.7	18	93	0	69	18	10	37	33	1.85
11638--11670	11	3.2	11	87	12	52	42	0	0	57	0.98
12019--12049	16	2.0	15	93	6	53	32	29	0	38	1.57
13715--13778	30	2.1	30	88	2	92	35	14	1	48	1.53
16442--16512	26	2.6	28	82	15	94	35	25	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16551--16605	27	2.0	27	100	0	110	18	18	27	36	1.94
16970--17009	17	2.3	17	91	4	62	60	17	7	15	1.57
17718--17787	29	2.4	30	85	7	90	38	2	28	30	1.71
20896--20932	3	12.7	3	91	5	58	62	0	0	37	0.96
27191--27706	40	12.1	40	74	11	314	36	18	26	18	1.94
27232--27706	87	5.5	86	82	5	496	36	18	25	18	1.94
27342--27697	46	8.0	46	78	10	335	36	18	25	19	1.94
30736--30768	11	3.0	11	95	0	57	21	9	33	36	1.85
31025--31065	18	2.1	21	86	13	61	19	4	26	48	1.69
31713--31805	42	2.3	42	75	17	104	59	16	6	18	1.58
41488--41524	19	1.9	19	94	0	65	29	18	13	37	1.90
42415--42446	15	2.1	15	100	0	64	50	12	0	37	1.41
52049--52091	22	2.0	22	95	0	77	62	11	6	18	1.50
55524--55593	37	1.9	37	94	2	124	32	4	7	55	1.46
57056--57171	32	3.6	32	85	0	142	39	12	15	31	1.85
57051--57192	64	2.2	64	82	3	171	41	11	15	31	1.82

Tables:   1

The End!