Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014098.1 Corchorus olitorius cultivar O-4 contig14131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48412

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1747--1777
10
2.9
11
95
4
55
38
9
9
41
1.71
2093--2226
49
2.7
50
80
10
143
50
5
16
27
1.66
4388--4430
22
2.0
22
86
9
61
23
27
30
18
1.98
8560--8666
29
3.8
28
80
3
106
21
14
22
41
1.90
23822--23946
50
2.6
47
79
12
137
48
6
15
29
1.69
26133--26229
49
2.0
49
100
0
194
30
24
12
31
1.92
32167--32229
3
21.3
3
93
3
110
33
1
0
65
1.03
32745--32823
41
1.9
41
94
5
142
32
15
16
35
1.90
35015--35071
25
2.3
25
100
0
114
57
7
21
14
1.60
36045--36077
13
2.5
13
100
0
66
21
21
9
48
1.77
43331--43356
3
8.7
3
100
0
52
34
0
0
65
0.93
43547--43658
56
2.0
56
89
3
172
34
22
1
41
1.64
43546--43670
56
2.3
55
85
8
157
38
21
1
38
1.63
43724--43804
42
1.9
42
94
0
144
29
8
16
45
1.77
44519--44570
3
17.3
3
100
0
104
32
0
0
67
0.91
47479--47508
15
1.9
16
93
6
53
46
6
6
40
1.56

Tables:   1

The End!