Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014099.1 Corchorus olitorius cultivar O-4 contig14132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5099
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38


Found at i:1070 original size:20 final size:19

Alignment explanation


    Indices: 1035--1087  Score: 61
    Period size: 20  Copynumber: 2.7  Consensus size: 19

       1025 TTTCCTTTAG

                       *    *   
       1035 TTTTGTTTTTAATTTTCGTA
          1 TTTTGTTTTT-GTTTTTGTA

                              *
       1055 TTTTGTTTTTGTTTTTGTT
          1 TTTTGTTTTTGTTTTTGTA

                          
       1074 TTTGTGTTTTTGTT
          1 TTT-TGTTTTTGTT

       1088 AATTTTGCAG


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  19    9  0.31
  20   20  0.69

ACGTcount: A:0.06, C:0.02, G:0.15, T:0.77


Consensus pattern (19 bp):   
TTTTGTTTTTGTTTTTGTA

Found at i:1087 original size:6 final size:6

Alignment explanation


    Indices: 1035--1083  Score: 53
    Period size: 6  Copynumber: 7.7  Consensus size: 6

       1025 TTTCCTTTAG

                        *     *                                     
       1035 TTTTGT TTTTAAT TTTCGT ATTTTGT TTTTGT TTTTGT TTTTGT GTTTT
          1 TTTTGT TTTT-GT TTTTGT -TTTTGT TTTTGT TTTTGT TTTTGT -TTTT

       1084 TGTTAATTTT


Statistics
Matches: 36,  Mismatches: 4, Indels: 5
        0.80            0.09        0.11

Matches are distributed among these distances:
   6   23  0.64
   7   13  0.36

ACGTcount: A:0.06, C:0.02, G:0.14, T:0.78


Consensus pattern (6 bp):   
TTTTGT
Done.