Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014102.1 Corchorus olitorius cultivar O-4 contig14135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36969

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6284--6381
22
4.5
22
74
15
87
34
18
8
38
1.80
6298--6403
22
4.8
22
77
11
101
35
18
8
36
1.82
6452--6668
22
9.8
22
70
15
135
38
17
9
34
1.83
6438--6668
65
3.5
66
79
8
227
38
17
9
34
1.81
6825--6863
20
2.0
20
85
10
53
64
2
5
28
1.28
7750--7811
26
2.3
26
84
15
74
46
1
6
45
1.38
12091--12141
2
25.5
2
77
15
52
49
3
1
45
1.32
13594--13978
30
12.7
30
92
1
518
33
19
16
30
1.94
13594--13978
121
3.2
121
86
1
547
33
19
16
30
1.94
19539--19685
72
2.0
72
97
0
276
39
7
4
48
1.53
20899--20945
22
2.1
22
84
7
60
61
2
12
23
1.42
20837--21006
93
1.8
93
93
0
295
52
1
12
32
1.49
21477--25004
336
10.6
331
78
7
3283
37
15
13
33
1.87
28971--29013
20
2.2
20
91
0
68
41
4
4
48
1.44
29944--30030
17
4.7
18
73
12
61
55
1
2
41
1.20
32789--32828
19
2.1
19
100
0
80
20
20
20
40
1.92
33113--33150
20
1.9
20
94
0
67
36
7
26
28
1.84
35525--35664
63
2.3
60
82
8
158
49
14
14
22
1.79
35684--35735
22
2.4
22
87
6
70
46
11
7
34
1.69

Tables:   1

The End!