Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014103.1 Corchorus olitorius cultivar O-4 contig14136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46600

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1377--1470
30
3.2
30
64
19
79
34
23
8
34
1.85
1364--1481
59
2.0
59
98
0
227
33
23
9
33
1.87
12316--12341
12
2.2
12
100
0
52
50
7
0
42
1.31
12327--12373
23
2.1
22
84
11
60
38
12
4
44
1.62
19738--19792
6
9.0
6
86
11
76
1
0
14
83
0.73
19738--19787
20
2.7
19
87
12
77
0
0
14
86
0.58
23731--23782
26
2.0
26
100
0
104
23
19
7
50
1.73
25745--25813
24
3.0
24
68
23
76
31
24
14
28
1.95
25804--25873
26
2.7
26
97
0
131
31
34
8
25
1.86
29009--29067
30
1.9
31
93
3
102
47
16
13
22
1.82
40851--40895
23
2.0
23
95
0
81
37
4
15
42
1.67
43154--43205
26
2.0
26
92
0
86
36
13
13
36
1.84
44005--44042
11
3.5
11
85
10
51
57
2
0
39
1.12
46400--46457
30
2.0
28
83
6
71
62
0
6
31
1.22
46566--46600
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!