Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014104.1 Corchorus olitorius cultivar O-4 contig14137, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3722
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31


Found at i:1785 original size:21 final size:21

Alignment explanation


    Indices: 1761--1810  Score: 82
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1751 TGCTAGAAGT

                                 
       1761 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGA

                           *    *
       1782 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGA

                    
       1803 TCATTGGA
          1 TCATTGGA

       1811 ATTGCCTAAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGA
Done.