genome.fa.s14105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014105.1 Corchorus olitorius cultivar O-4 contig14138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43906

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9371--9455	42	2.0	43	93	2	145	32	30	17	18	1.95
10125--10238	22	5.2	22	71	4	77	34	14	7	44	1.72
10220--10659	22	19.9	22	70	13	244	36	16	9	37	1.81
10760--10924	22	7.6	22	72	8	99	34	16	8	40	1.79
10821--10926	44	2.4	44	80	12	121	35	15	8	40	1.77
10821--10927	22	4.9	23	74	12	100	35	14	8	41	1.77
10780--10985	65	3.2	66	77	9	149	32	16	9	41	1.81
11022--11081	22	2.7	22	84	7	86	46	13	8	31	1.72
11161--11261	27	3.7	27	84	5	123	17	14	28	38	1.90
13375--13461	41	2.1	41	91	0	138	31	12	16	40	1.85
13375--13479	41	2.6	41	81	6	113	26	15	18	40	1.90
25607--25824	102	2.0	103	81	9	249	24	12	11	50	1.74
34201--34281	42	2.0	42	97	2	155	32	8	9	49	1.66
34868--34943	22	3.4	22	87	1	98	39	15	13	31	1.86
34974--35029	22	2.5	22	82	2	67	39	14	12	33	1.83
34860--35032	66	2.6	66	72	8	154	39	15	12	32	1.84
35013--35119	23	4.7	23	83	5	112	36	16	10	36	1.83
34994--35119	22	5.6	22	81	10	123	37	15	10	36	1.82
35213--35282	22	3.2	21	78	8	77	42	11	8	37	1.72
35389--35625	22	10.8	21	70	10	86	35	12	9	41	1.76
35677--35804	22	5.9	21	71	13	62	38	18	8	34	1.82
35822--35861	22	2.0	21	85	14	57	50	10	5	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35889--36019	22	6.0	21	76	7	100	35	19	9	35	1.85
35841--36017	66	2.7	66	83	5	196	37	18	7	36	1.80
35891--36067	22	7.9	22	69	13	74	37	17	9	36	1.82
36233--36271	20	2.0	20	85	10	53	64	2	5	28	1.28
39789--39849	27	2.3	27	82	5	70	36	13	21	29	1.91
43326--43388	24	2.6	24	87	2	81	60	4	6	28	1.42

Tables:   1

The End!