Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014108.1 Corchorus olitorius cultivar O-4 contig14141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17118
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31


Found at i:10323 original size:2 final size:2

Alignment explanation


    Indices: 10316--10341  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

      10306 TATTTTAGAA

                                                  
      10316 AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG

      10342 GTCAAATGGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Found at i:17053 original size:18 final size:18

Alignment explanation


    Indices: 17032--17066  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      17022 CCAATGGATC

                              
      17032 CGTAAATCCCAAAAATGA
          1 CGTAAATCCCAAAAATGA

                             
      17050 CGTAAATCCCAAAAATG
          1 CGTAAATCCCAAAAATG

      17067 GGTTGACAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.49, C:0.23, G:0.11, T:0.17


Consensus pattern (18 bp):   
CGTAAATCCCAAAAATGA
Done.