Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001411.1 Corchorus olitorius cultivar O-4 contig01411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1801
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32


Found at i:1207 original size:13 final size:13

Alignment explanation


    Indices: 1189--1219  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1179 AAACGGAAAA

                         
       1189 TCCAGAAGTACTT
          1 TCCAGAAGTACTT

                     *   
       1202 TCCAGAAGTGCTT
          1 TCCAGAAGTACTT

                 
       1215 TCCAG
          1 TCCAG

       1220 TTGTTTTTGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29


Consensus pattern (13 bp):   
TCCAGAAGTACTT
Done.