Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014114.1 Corchorus olitorius cultivar O-4 contig14147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161299

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13065--13103
20
2.0
20
85
10
53
30
23
25
20
1.98
13815--13912
30
3.3
30
97
0
187
31
31
21
15
1.94
17846--18123
117
2.4
117
94
1
396
14
35
19
30
1.91
22231--22405
89
2.0
86
92
7
289
40
6
33
20
1.79
24299--24346
23
2.1
23
100
0
96
18
12
35
33
1.89
28276--28350
32
2.4
32
80
6
82
40
8
24
28
1.83
91060--91094
18
1.9
18
94
0
61
25
28
11
34
1.91
129850--129881
2
16.5
2
93
6
57
50
0
0
50
1.00
142881--142939
30
2.0
30
100
0
118
38
30
10
20
1.86
154515--154555
21
2.0
21
85
9
57
58
17
4
19
1.56
154862--154895
17
1.9
18
88
5
52
14
26
2
55
1.53
160316--161183
320
2.7
325
82
6
983
35
16
14
32
1.90
160316--161284
331
3.0
321
80
8
1025
35
17
15
31
1.91

Tables:   1

The End!