Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014120.1 Corchorus olitorius cultivar O-4 contig14153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93587

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3383
332
10.3
333
76
11
2860
35
16
14
33
1.89
1400--3901
658
3.8
648
81
7
2544
36
15
14
34
1.88
1434--3928
327
7.6
325
76
9
1876
36
15
14
34
1.88
4261--4297
15
2.4
16
82
13
51
54
0
0
45
1.00
5350--5379
15
2.0
15
100
0
60
40
33
6
20
1.78
6945--7056
39
2.9
39
100
0
224
17
4
21
56
1.59
6945--7042
19
5.0
20
61
14
60
16
5
21
57
1.58
8133--8169
2
18.5
2
100
0
74
48
0
0
51
1.00
21210--21272
30
2.1
31
84
3
83
36
25
11
26
1.90
43612--43797
22
8.5
22
76
13
136
34
13
9
41
1.78
43699--43769
23
3.2
21
86
5
88
36
15
8
39
1.78
43763--43822
22
2.8
22
73
16
63
25
15
10
50
1.74
43987--44011
12
2.1
12
100
0
50
8
8
0
84
0.79
46132--46161
6
4.8
6
95
4
51
33
0
16
50
1.46
51167--51191
2
12.5
2
100
0
50
48
0
0
52
1.00
84772--84815
21
2.0
22
82
13
54
38
4
4
52
1.42
89467--89492
12
2.2
12
100
0
52
34
7
0
57
1.27
92332--92385
9
6.1
9
89
4
56
0
12
0
87
0.56
92353--92383
1
31.0
1
93
0
53
0
3
0
96
0.21

Tables:   1

The End!