Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014121.1 Corchorus olitorius cultivar O-4 contig14154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58331
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:2156 original size:227 final size:227
Alignment explanation
Indices: 1761--2218 Score: 898
Period size: 227 Copynumber: 2.0 Consensus size: 227
1751 TGAGGGCAAT
1761 GAAACCTCATTCATTCCATTTGAAAGTAACCATTTATAGGAAACAGGCTGTTGAAGATTCAAATT
1 GAAACCTCATTCATTCCATTTGAAAGTAACCATTTATAGGAAACAGGCTGTTGAAGATTCAAATT
1826 TGGGTTCATCATGTGGTAAGAGAGAAATGGTAAAACAAATTATCATCAGAAATTAGTAACATAAG
66 TGGGTTCATCATGTGGTAAGAGAGAAATGGTAAAACAAATTATCATCAGAAATTAGTAACATAAG
1891 GCAGGCGCAGGCTTGATGGCTGATATAATTGCTGTAGCCCATCCGAGGAGTATCAATGGGTCATT
131 GCAGGCGCAGGCTTGATGGCTGATATAATTGCTGTAGCCCATCCGAGGAGTATCAATGGGTCATT
1956 GGGGCCTAAATGATGATGGAAAATAGGTTGCA
196 GGGGCCTAAATGATGATGGAAAATAGGTTGCA
1988 GAAACCTCATTCATTCCATTTGAAAGTAACCATTTATAGGAAACAGGCTGTTGAAGATTCAAATT
1 GAAACCTCATTCATTCCATTTGAAAGTAACCATTTATAGGAAACAGGCTGTTGAAGATTCAAATT
*
2053 TGGGTTCATCATGTGGTAAGAGAGAAATGGTAAAACAAATTATCATCATAAATTAGTAACATAAG
66 TGGGTTCATCATGTGGTAAGAGAGAAATGGTAAAACAAATTATCATCAGAAATTAGTAACATAAG
*
2118 GCAGGCGCAGGCTTGATGGCTGATATTATTGCTGTAGCCCATCCGAGGAGTATCAATGGGTCATT
131 GCAGGCGCAGGCTTGATGGCTGATATAATTGCTGTAGCCCATCCGAGGAGTATCAATGGGTCATT
2183 GGGGCCTAAATGATGATGGAAAATAGGTTGCA
196 GGGGCCTAAATGATGATGGAAAATAGGTTGCA
2215 GAAA
1 GAAA
2219 TTTGCTAAGC
Statistics
Matches: 229, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
227 229 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (227 bp):
GAAACCTCATTCATTCCATTTGAAAGTAACCATTTATAGGAAACAGGCTGTTGAAGATTCAAATT
TGGGTTCATCATGTGGTAAGAGAGAAATGGTAAAACAAATTATCATCAGAAATTAGTAACATAAG
GCAGGCGCAGGCTTGATGGCTGATATAATTGCTGTAGCCCATCCGAGGAGTATCAATGGGTCATT
GGGGCCTAAATGATGATGGAAAATAGGTTGCA
Found at i:28814 original size:17 final size:18
Alignment explanation
Indices: 28789--28822 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
28779 TCTAGCAAAT
*
28789 ATCCTAAAAGGGAGAATA
1 ATCCTAAAAGGAAGAATA
28807 ATCC-AAAAGGAAGAAT
1 ATCCTAAAAGGAAGAAT
28823 TAAATGGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.12, G:0.21, T:0.15
Consensus pattern (18 bp):
ATCCTAAAAGGAAGAATA
Found at i:35439 original size:12 final size:12
Alignment explanation
Indices: 35422--35446 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35412 TTAAAATTAC
35422 ATATATAATATG
1 ATATATAATATG
35434 ATATATAATATG
1 ATATATAATATG
35446 A
1 A
35447 ATAAAGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
ATATATAATATG
Found at i:37737 original size:21 final size:19
Alignment explanation
Indices: 37710--37766 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 19
37700 CGCTGCTTTA
37710 ATAATCTCATCTGTACAAT
1 ATAATCTCATCTGTACAAT
* * *
37729 ACCTAATCTAATTTGTACAGT
1 A--TAATCTCATCTGTACAAT
37750 ATAATCTCATCTGTACA
1 ATAATCTCATCTGTACA
37767 GTTGTCAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (19 bp):
ATAATCTCATCTGTACAAT
Found at i:37756 original size:19 final size:19
Alignment explanation
Indices: 37710--37768 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
37700 CGCTGCTTTA
* *
37710 ATAATCTCATCTGTACAAT
1 ATAATCTAATCTGTACAGT
*
37729 ACCTAATCTAATTTGTACAGT
1 A--TAATCTAATCTGTACAGT
*
37750 ATAATCTCATCTGTACAGT
1 ATAATCTAATCTGTACAGT
37769 TGTCAAACAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 17 0.52
21 16 0.48
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.37
Consensus pattern (19 bp):
ATAATCTAATCTGTACAGT
Found at i:49421 original size:21 final size:22
Alignment explanation
Indices: 49397--49441 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
49387 ATAATCTGAA
*
49397 TTGCTAAATACCGTCC-CCTTT
1 TTGCTAAATACCGCCCACCTTT
**
49418 TTGCTACTTACCGCCCACCTTT
1 TTGCTAAATACCGCCCACCTTT
49440 TT
1 TT
49442 ACACTTTTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.16, C:0.36, G:0.09, T:0.40
Consensus pattern (22 bp):
TTGCTAAATACCGCCCACCTTT
Found at i:49447 original size:21 final size:21
Alignment explanation
Indices: 49405--49447 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
49395 AATTGCTAAA
* *
49405 TACCGTCCCCTTTTTGCTACT
1 TACCGCCCCCTTTTTACTACT
49426 TACCGCCCACCTTTTTAC-ACT
1 TACCGCCC-CCTTTTTACTACT
49447 T
1 T
49448 TTGCCCTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.14, C:0.40, G:0.07, T:0.40
Consensus pattern (21 bp):
TACCGCCCCCTTTTTACTACT
Found at i:53555 original size:645 final size:645
Alignment explanation
Indices: 49781--58325 Score: 4267
Period size: 656 Copynumber: 13.0 Consensus size: 645
49771 GATTTCGGCT
* * ** * * *
49781 AAAAACTGACCCG-AAAACTTATTTCAGAATTTTTTGCGACAATACTCGGAAAAAATATGTAATT
1 AAAAACTGACCCGAAAAAGTT-TTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* * ** * * ** * *
49845 TAACGAAAAAAAGATT-AACGGGCTTTTCACGCTTCTAAAATTTTTTTTCCA--TTTTTTTCCGA
65 CAATGCCAAAAA-ATTGAA-GGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTTCGA
* * * * * * * *
49907 ATTAATTTCTAATTAAATCGAGATAAGATTCAGATGTTCGTAAAAACAAATCCTTAAATCCAATA
128 ATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATTG
* * * * * * **
49972 TAGCTGACATTTTGTTGGATTAAAATAGATATTTCAAGGAGTCTTTAC-GAAAAAAATCATGC-A
193 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATGCAA
* ** * ** * * * *
50035 AATTGAGTCGGGGCTACGGAGCGTGTTTTTAGCCAAAAACCTTGTTGGTTAGTACACGATTTCGG
257 AACTGAGTC-GGGCCCCGAAATGCGTTTTTAG-CATAAACCGTGATGGTTAGTACACGATTTCGG
* * *** * * *
50100 CAAAAAATTTTG-CAAAAGCTAACCCAAAAACTTTTTCCACATTTTTTTGCCAC-A-ATACTCAG
320 CTAAAAA--CTGAC-AAA---AA--C--ATTTTTTTTCTA-AATTTTTTGCGACAATATACT-AG
* * * * *
50162 -AAAAAGTATATAATTCAATC-CCAAAAA-ATTG-GAGGGTTTTTACGCTTCTAATATCATTTTT
373 AAAAAAATATATAATTCAA-CGCCAAAAAGATTGATAGGCTTTTCAGGCTTCT-A-A--A---TT
** *
50223 CAAATTTTTTTCTCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAGCAA
430 ----TTTTTTTC-CGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAA
* * * * ** * * * *
50288 TTCCTTAAATCCATTGTGGCTGACACTTGGTTGGATTAATATAGATATTTCACGGAATCTTT-CT
490 ATCCTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTAC-
** ** * * ** *
50352 CCCAAAAATCATGCAAAACTGAG-CGGGGCCCCCGAAATGCGTTTTTAGGCAAAAACGATGAATG
554 AACAAAAATCATGC-AAACTGAGTCGGGG-CTACGGAACGCGTTTTTAACCAAAAACTATG-ATG
50416 GTTAGTACACGATTTCGGC--------T--
616 GTTAGTACACGATTTCGGCTAAAATTTTGC
* ** * * ** *
50436 AAAAACTGACCCCAAAATTTTTATTTCTAAATTTTTTGTGACAATACTCATAAAAAATATATAAT
1 AAAAACTGACCCGAAAA-AGTT-TTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAAT
* ** * ** * * ** * *
50501 TCAACAGAAAAAAAATTTAACGGGCATTTCACGCTTTTAATTTTTTTTTTCCAA----ATTTTCC
64 TCAA-TGCCAAAAAATTGAA-GGGTTTTTCACGCTTCTAATATCGTTTTT-CAATTTTTTTTTTC
* * * * * * *
50562 GAATTCATTTCTAATTTAATCAAAACAAGATTCAGATGTTCGTAAAAACAAATCCTTAAATCCAA
126 GAATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCAT
* ** * ** *
50627 TCTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTAC-AACAAAAACCATGC
191 TGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATGC
** * ** ** * * *
50691 -AATTTGAGCCGGGGCTACGAAACACGTTTTTAACCAAAAACTGTGATGGTTAGTACACGATTTC
255 AAAACTGAGTC-GGGCCCCGAAATGCGTTTTT-AGCATAAACCGTGATGGTTAGTACACGATTTC
** **** * *
50755 GGCTAAAATTTTG-CAAAAACTGACCCGAAAAAGTTTTCCACAATTCTTTG-G-CACA-ATACTC
318 GGCTAAAA-ACTGAC-AAAA---A--C--ATTTTTTTTCTA-AATTTTTTGCGACA-ATATACT-
* * *
50816 AG-AAAAAATATATAATTCAATGCCAAAAA-ATTTGA-AGGGTTTTTCATGCTTCTAATATCGTT
371 AGAAAAAAATATATAATTCAACGCCAAAAAGA-TTGATA-GGCTTTTCAGGCTTCTAA-A-----
* ** * **
50878 TTTCAATTTTTTTTCGAATTTATTTCTAATTAAATTGAAACAAGATTCAAATGCTCGTAAAAGTA
428 -TT---TTTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACA
* * * * ** * * * *
50943 ATTCCTTAAATCCATTGTGGCTGACACTTGGTTGGATTAATATAGATATTTCACGGAGT-TTTTC
489 AATCCTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTAC
** ** * * * ** *
51007 TCCCAAAAATCATGCAAAACTGAG-CGGGGCCCCCGAAATGCGATTTTAGGCAAAAACGATGAAT
554 -AACAAAAATCATGC-AAACTGAGTCGGGG-CTACGGAACGCGTTTTTAACCAAAAACTATG-AT
51071 GGTTAGTACACGATTTTCGGC--------T--
615 GGTTAGTACACGA-TTTCGGCTAAAATTTTGC
* ** * * * *
51093 AAAAACTGACCCCAAAATTTTTATTTCTAAATTTTTTGCGACAATACTCGGAAAAAATATATAAT
1 AAAAACTGACCCGAAAA-AGTT-TTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAAT
** * ** * * ** * *
51158 TCAATGGAAAAAAAATTTAACGGGCATTTCACGCTT-AAATTTTTTTTTTCCAA----ATTTTCC
64 TCAAT-GCCAAAAAATTGAA-GGGTTTTTCACGCTTCTAATATCGTTTTT-CAATTTTTTTTTTC
* * * * *
51218 GAATTCT-TTTCTAATTTAATCAAAACAAGATTCAGATGTTCGTAAAAACAAATCCTTAAATCCA
126 GAATT-TATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCA
* ** * * **
51282 CTGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTATTTAC-AACAAAAATCATG
190 TTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATG
** * ** * * * * ** * *
51346 C-AATTTGAGCCGGGGCTACGAAACGCGTTTTTAACAAAAAAC-TG-TGAATA-TATAAGATTTC
254 CAAAACTGAGTC-GGGCCCCGAAATGCGTTTTTAGCATAAACCGTGATGGTTAGTACACGATTTC
* **** * *
51407 GGCTAAAAATTTTG-CAAAAACTGACCCGAAAAAGTTTTCCACAATTCTTTG-G-CACA-ATACT
318 GGCTAAAAA--CTGAC-AAAA---A--C--ATTTTTTTTCTA-AATTTTTTGCGACA-ATATACT
* * * *
51468 CCG-AAAAAATATATAATTCAATGCCAAAAA-ATTTGA-AGGGTTTTTCATGCTTCTAATATCGT
371 -AGAAAAAAATATATAATTCAACGCCAAAAAGA-TTGATA-GGCTTTTCAGGCTTCTAA-A----
**
51530 TTTTCAATTTTTCTTTTCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAA
428 TTTT---TTTTTC----CGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAA
* * * * * * ** * *
51595 GCAATTCCTTAAATCCATTGTGGTTGACACTTGGTTGGATTAATATAGATATTTCAAGGAGTCTT
486 ACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTT
** * ** * * ** **
51660 T-CTGCCAAAAATCATGCAAAACTGTG-CGGGGCCCCCGAAATGCGTTTTT-AGGATAAAACCGT
551 TAC-AACAAAAATCATGC-AAACTGAGTCGGGG-CTACGGAACGCGTTTTTAACCA-AAAACTAT
*
51722 GATAGTTAGTACACGATTTCGGC----A------
612 GATGGTTAGTACACGATTTCGGCTAAAATTTTGC
* * ** * * *
51746 AAAAACTGACCCCAAAAATTTTTTAATGAATTTTTTGCCAAAATACTCGGAAAAAATATATAATT
1 AAAAACTGACCCGAAAAA-GTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* ** * ** * *
51811 CAATGCCAGAAAGATTGACA-GCCTTTTCACGCTTCTAGAGATTTTTTTTCCA-TTTTTATTTCA
65 CAATGCCA-AAAAATTGA-AGGGTTTTTCACGCTTCTA-ATATCGTTTTTCAATTTTTTTTTTC-
* * * *
51874 GAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATT-CTTAAATCCA
126 GAATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAAC-AATTCCTTAAATCCA
* * * * * *
51938 ATGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCTAGGATTCTTTAC-GACAAAAATCATT
190 TTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATG
*** * * * * *
52002 C-AAACTGAGTCGGGTTTACGAGACGCGTTTTAAGCCAAAAACCGTGATGGTTAATACACGATTT
254 CAAAACTGAGTCGGG-CCCCGAAATGCGTTTTTAG-CATAAACCGTGATGGTTAGTACACGATTT
*** *** *
52066 CGGCTAAAGTTTTG-CAAAGACTGACCCGAAAGGTTTTTCGTTAAA-TTTTTGCAAC-A-ATACT
317 CGGCTAAA-AACTGACAAA-A---A--C--ATTTTTTTTC--TAAATTTTTTGCGACAATATACT
* * * * * *
52127 CAAAAAAAAAAATATAATTCAACACCAAAAA-ATT-AAAGGGTTTTCACGCCTT-TAATATCGTT
371 -AGAAAAAAATATATAATTCAACGCCAAAAAGATTGATAGGCTTTTCA-GGCTTCTAA-A-----
* * * * *
52189 TTCCTTTTTTTTCGAATTTATTTCTATTTAAATCAAAATAAGTTTCAGATGCTCGTAAAAATAAA
428 TT--TTTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAA
* * * * *
52254 T-CTTAAATCCATTATGGCTGAGATTTGGTTATATGTATATAGATATTTCAAGGAGTCTTT-CAA
491 TCCTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAA
* * * * * * *
52317 CCTAAAATCATGCAAAACTGAGTTGGGGCCT-CGAAACGCGTTTTTAGCTAAAAAACCATGATGT
556 -CAAAAATCATGC-AAACTGAGTCGGGG-CTACGGAACGCGTTTTTAAC-CAAAAACTATGATGG
* ** *
52381 TTAGTGCATAATTTCAGCTAAAATTTTGC
617 TTAGTACACGATTTCGGCTAAAATTTTGC
** * ** *
52410 -AATGCTGCCCCGAAAATTTTTTCCTCAATTCTTTGCCACAAACAATACTCTA-AAAAAATATAT
1 AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTG-C-C--ACAATACTC-AGAAAAAATATAT
* * * * * **
52473 AAATCAACGCCAAAAAAATTGAAGGGTTTTTCTCGTTTCTAGTATCGTTTTTCTTTTTTTTTTTT
61 AATTCAATGCC-AAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC--AATTTTTTTT
* * * * *
52538 TTCGAATTTATTTCAAAGTAAATCGAAATAATATTCAGATGCTCATAAAAATAAATT-CTTAAAT
123 TTCGAATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAA-CAATTCCTTAAAT
* * * * ***
52602 CCATTGTGGCTGAGGTTTGATTAGATGAATATAGATATTTCAAGGAGTATTCCTATTAAAAATCA
187 CCATTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCA
* * * * *
52667 TGTAAAACTAAGTCGGGGCCCCAAAATGCATTTTTAGCCA-AGAACCGTGATGGTTAGTACACAA
252 TGCAAAACTGAGTC-GGGCCCCGAAATGCGTTTTTAG-CATA-AACCGTGATGGTTAGTACACGA
* * *
52731 TTTCGCCTAAAAACTG------ACTTTTTTTTTCTAAATTTTTTGCTAC-A-ATACTTAGAAAAA
314 TTTCGGCTAAAAACTGACAAAAACATTTTTTTTCTAAATTTTTTGCGACAATATAC-TAGAAAAA
* * * *
52788 AGTATATAATTCAACGCCAAAAAGATTGATGGGCTTTTCAGACTTCTAAA-ATTTTTTTCCGAAT
378 AATATATAATTCAACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCTAAATTTTTTTTTCCGAAT
* * * * *
52852 TCATTTCTAATTTTAA-CAAAACAAGATTTAGATGTTCGTAAAAATAAATCCTTAAATCCAATGT
443 TTATTTCTAA-TTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* **
52916 GGCTGAGATTTGATTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGCAATT
507 GGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGCAAAC
*
52981 TGAGTCGGGGCTACGGAACGCGTTTTTAACC-AAAACTGTGATGGTTAGTACACGATTTCGGCTA
572 TGAGTCGGGGCTACGGAACGCGTTTTTAACCAAAAACTATGATGGTTAGTACACGATTTCGGCTA
53045 AAATTTTGC
637 AAATTTTGC
*
53054 AAAAACTGACCCGAAAAAGTTTTCCTTAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
1 AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
53119 AATGCCAAAAAATTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTGTTTTTTCGA
66 AATGCCAAAAAA-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAA-TTTT-TTTTTTCGA
* * **
53184 ATTTATTTCTAATTAAATTGAAACAATATTCAGATGCTCGTAAAAGCAATTCCTTAAATGAATTG
128 ATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATTG
* **
53249 TGGCTGACACCTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAA
193 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAA
* * *
53314 ACTGAG-CGGGCCCCGAAATTCGTTTATAGGATAAAGCCGTGATGGTTAGTACACGATTTCGGCT
258 ACTGAGTCGGGCCCCGAAATGCGTTTTTAGCATAAA-CCGTGATGGTTAGTACACGATTTCGGCT
*
53378 AAAAACTGACAAAAACATTTTTTTTCTAAATTTTTTGCGACATTATAC-AGAAAAAAATATATAA
322 AAAAACTGACAAAAACATTTTTTTTCTAAATTTTTTGCGACAATATACTAGAAAAAAATATATAA
* * * *
53442 TTCAACGCCAAAAATATTGATGGGCTTTTCAGGCTTCTAAA-TTTTTTTTCCGAATTCATTCCTA
387 TTCAACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCTAAATTTTTTTTTCCGAATTTATTTCTA
* * * * * *
53506 ATTTAATAAAAACAAGATTCAGATGTTCCTAAAAACAAATCCATAAATCCAATGTAGCTGAGATT
452 ATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATT
** *
53571 TGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGCAATTTGAGCCGGGG
517 TGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGCAAACTGAGTCGGGG
* *
53636 CTACAGAACGCGTTTTTAACCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAATTTTAC
582 CTACGGAACGCGTTTTTAACCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAATTTTGC
*
53700 AAAAATTGACCCGAAAAAAGTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
1 AAAAACTGACCCG-AAAAAGTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* * *
53765 CAATGCCAAAAAATTTGAAGGGTTTTTCATGCTTCTAATATCGTTTTTCAGTTTTTGTTTTCGAA
65 CAATGCCAAAAAA-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTTCGAA
* * * **
53830 TTTATTTCTAATTAAATTGAAACAATATTCAGATGCTCGTAAAAGCAAATCCTTAAATGAATTGT
129 TTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATTGT
* * * *
53895 GGCTGACACTTGGTTAGATGAATACAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAA
194 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAA
* *
53960 TTGAG-CGGGCCCCGAAATGCGTTTTTAGGATAAAGCCGTGATGGTTAGTACACGATTTCGGC-A
259 CTGAGTCGGGCCCCGAAATGCGTTTTTAGCATAAA-CCGTGATGGTTAGTACACGATTTCGGCTA
** * * * *
54023 AATAACTGACCCCCAAA-TTTTTTTTTCCTGAATGTTTTGCCACAATACT-CT-G-AAAAAATAT
323 AA-AACTGA--CAAAAACATTTTTTTT-CTAAATTTTTTGCGACAATA-TACTAGAAAAAAATAT
* * *
54084 ATAGTTCAATGCCAAAAAGATTGATAGGCTTTTCATGCTTCTAAGAGTTTTTTTTCAATTTTTTT
383 ATAATTCAACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCT---A----------AA-TTTTTT
* * * * *
54149 TTTCAGAATTAATTTCTAATTAAATAAATAAAAAAGATTCAGATGCTCGTAAAAACAAATTCTTA
434 TTTCCGAATTTATTTCTAATTAAAT-CA-AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
* * * * * * *
54214 AAACCAATGTGGCGGAGATTTGGTTTGATGAATATAGATATTTCAAGGATTCTTTACGAGAAAAA
497 AATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAA
* ** * ** * *
54279 TCATTCAAACTGAGTCGGGTTTACAGAACGCG-TTTTAAGCCAAAAACCGTGATAGTTAATACAC
562 TCATGCAAACTGAGTCGGGGCTACGGAACGCGTTTTTAA-CCAAAAACTATGATGGTTAGTACAC
*
54343 GATTTCGGCTAAAGTTTTGC
626 GATTTCGGCTAAAATTTTGC
* * *
54363 AAAAATTGACCCG-AAAGGTTTTTCCTCAATTTTTTTCCACAATACTCAGAAAAAATATATAATT
1 AAAAACTGACCCGAAAAAG-TTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* * * * * * * * *
54427 GAACGCCAAAAAAGTT-AAAGGATTTTCACGCTTTTAATATCGTGTTCCCA--TTTTTTCT-GAA
65 CAATGCCAAAAAA-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTTCGAA
* * * *
54488 TTTATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTTAAAACAAATCCTTAAATCCATTGT
129 TTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATTGT
* * *
54553 GGCTGAGATTTGGTAAGATGAATATAGATATTTCAAGGAGTCTTTCAGCCTAAAATCATGCAAAA
194 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAA
* * * * * *
54618 CTGAGTCGGG-CCCGAAACGCG-TTTTACCAAAAAACCATGATGGTTAATACACGATTTCAGCTA
259 CTGAGTCGGGCCCCGAAATGCGTTTTTAGC-ATAAACCGTGATGGTTAGTACACGATTTCGGCTA
*** ** * *
54681 TAATTTTG-CAAAGACCGACCCGAAAGGTTTTTCCTCAAATTTTTAGC-ACACA-ATACTTAG-A
323 -AAAACTGACAAA-A---A--C---ATTTTTTTTCT-AAATTTTTTGCGACA-ATATAC-TAGAA
* * ** *
54742 AAATATATATAATTCAACGCCAAAAA-ATT-AAAGGCTTTTCACACTTTTAATATCGTTTTCCCA
375 AAAAATATATAATTCAACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCTAA-A-----TT----
* * *
54805 TTATTTTTCCAGAATTTATTTCTAATTAAACCGAAATAAGATTCAGATGCTCGTAAAAACAAATC
430 TT-TTTTTCC-GAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATC
* * ** * *
54870 CTTAAATCCATTGTGGTTGAGATTTGGTTAGATGAATATGAATATTTCAAGGAGTCTTT-CAGCC
493 CTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACA-AC
* * ** * * * ** **
54934 TAAAATCATACAAAACTGAGTCGGGGCCCCGAAATGCAG-TTTTAGCCAAAAAAAACCATGGTTA
557 AAAAATCATGC-AAACTGAGTCGGGGCTACGGAACGC-GTTTTTAACCAAAAACTATGATGGTTA
* * *
54998 TTGCATGATTTCGGCTAAAATTTTGC
620 GTACACGATTTCGGCTAAAATTTTGC
** ** * ** *
55024 -AATGCTTCCCCGGAAATTTTTTCCTCAATTCTTTGCCACAAACAATACTCAGAAAAAATATATG
1 AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTG-C-C--ACAATACTCAGAAAAAATATAT-
* * * * *
55088 AA-TCAATGCCAAAAAAATTGAAGGGATTTTCTCGTTTTTAGTATCGTTTTTC--TTTTTATTTT
61 AATTCAATGCC-AAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTT-TTTT
* *
55150 TCCGAATTTATTTCTAAGTAAATCGAAACAATATTCAGATGCTCATAAAATA-AATT-CTTAAAT
124 T-CGAATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAA-ACAATTCCTTAAAT
* * * *
55213 CCATTGTGGCTGAGATTTGATTAGATGAATATAGATATTTGAAGGAGTATTCCTGCCAAAAATCA
187 CCATTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCA
* *
55278 TGCAAAATTGAGTCAGGACCCCGAAATGCGTTTTTAGCCA-AGAACCGTGAT-GTTAGGAATGA-
252 TGCAAAACTGAGTC-GGGCCCCGAAATGCGTTTTTAG-CATA-AACCGTGATGGTTA-G--T-AC
* * ** * *** *
55340 AGGAAATTTAGG--AAGAAA--GA-AAAAGGGA---------GAAA-TAGATG-GACAGAGCCA-
310 ACG--ATTTCGGCTAA-AAACTGACAAAA-ACATTTTTTTTCTAAATTTTTTGCGACA-A--TAT
* * * * * * ** * **
55388 AGCAAGAAGAGAATAGA-AATTTTAGATGAGAAAATATGACTTCTTGTTACAAACTGGTTTACAA
368 A-CTAGAAAAAAATATATAA-TTCA-ACGCCAAAA-A-GA----TTG--ATAGGCT--TTT-C-A
* * *** * * * * * ** * * * * *
55452 CGTGGGTATATAAAGAGATGTGTTCAAGGA-TAACTACCTAGAGTGATTGCCTAGAATCATGCCA
418 ---GGCT-TCTAAA-TTTTTTTTTC-CGAATTTA-TTTCTA-ATTAAAT--C-A-AAACAAG--A
* * ** * * ** ** * *** *
55516 CTAACAAGAGTTG-T-GCAAAAGGAAATAACTGAAA--CAAAATAACTTAAAGAAAATTAACTAA
469 -T-TC-AGA--TGCTCGTAAAAACAAAT-CCTTAAATCCAATGTGGC-T---G-AGATTTGGT-T
* ** * ***** * *
55577 TTAT-TATAGTAAA-A-CGC-AGCAG-CTTGTATCATTACTCCCCTCTTCTATAGCAACCTTGCC
522 TTATGAATA-TAAATATTTCAAGGAGTCTT-TA-CA--A---CAAAAATC-AT-GCAAAC-TG-A
* ** * *** * * **
55637 CTCAAGG-T--TGAA-G-GTAAGATAGCCAAAAAAAATCATGATGGTTTTTACACGATTTCGGC-
575 GTCGGGGCTACGGAACGCGT-TTTTAACC--AAAAACT-ATGATGGTTAGTACACGATTTCGGCT
55696 -------T--
636 AAAATTTTGC
* * **
55697 AAAAACTGA--CAAAAAATTGTTTT-TTCTAATTTTTTTGTGACAATACTCAG-AAAAATATATA
1 AAAAACTGACCCGAAAAA--GTTTTCCTC-AA-TTTTTTGCCACAATACTCAGAAAAAATATATA
* * * * * ** * *
55758 ATTCAACGCCAAAAAGATTGATGGGCTTTTCAGGCTTCTAATTTTTTTTTTCCA--TTTTTTTCC
62 ATTCAATGCCAAAAA-ATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTTC
* * * * * * * * *
55821 GAATTCACTTT-TAATTTAATCAAAATAAGATTCAGATGTTCGTAAAAACAAATCTTTACATCCA
126 GAATTTA-TTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCA
* ** * * **
55885 ATGTGGCTGAGATTTGGTTTTATGAATATAAATGTTTCAAGGAGTCTTTAC-AACAAAAATCATG
190 TTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATG
** * ** ** * * * *
55949 C-AATTTGAGCTGGGGCTACGGTATGCGTTTTTAACAAAAATCTGTGATGCACGATTTCGGCTA-
254 CAAAACTGAG-TCGGGCCCCGAAATGCGTTTTTAGCATAAA-CCGTGATG---G--TT-AG-TAC
* * ** ** * * *
56012 A-AATTT-TGC-AAAAACTGACCCGAAA-A-GGTTTTCCTCAATTTTTTGCAAC-A-ATACTCAG
310 ACGATTTCGGCTAAAAACTGA-CAAAAACATTTTTTTTCTAAATTTTTTGCGACAATATACT-AG
* * **
56070 -AAAAAATATATAATTCAATGCCAAAAA-ATTTGA-AGGTTTTTTCACACTTTTAATATCGTTTT
373 AAAAAAATATATAATTCAACGCCAAAAAGA-TTGATAGG-CTTTTCAGGC------T-TC-----
* * **
56132 TCAATTTTTTTTTTCGAATTTATTTCTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAGA-
424 TAAATTTTTTTTTCCGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAA-AC
* * * * ** * *
56196 AATTCC-TAAATCCATTGTGGCTGACACTTGGTTGGATTAATATAGATATTTCAAGGAGTCTTT-
488 AAATCCTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTA
** * ** ** ** * ** *
56259 CTGCCAAAAATCATGCAAAACTGAGTTGGTCCCCCAAAATGCGTTTTT-AGGATAAAAC--CG-T
553 C-AACAAAAATCATGC-AAACTGAGTCGGGGCTACGGAACGCGTTTTTAACCA-AAAACTATGAT
*
56320 -GAT-GTACACGATTTCGGC--------T--
615 GGTTAGTACACGATTTCGGCTAAAATTTTGC
* * ** * *
56339 AAAAACTGACCCCAAAAATTTTTCCTGGATGTTTTGCCAAAATACTCAGAAAAAATATATAATTC
1 AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
* * * * * *
56404 AATGCCTGAAAGATTGACA-GGCTTTTCACGCTTCTAAAGAT-TTTTTTCCA---TTTTTTTCAG
66 AATGCC-AAAAAATTGA-AGGGTTTTTCACGCTTCT-AATATCGTTTTTCAATTTTTTTTTTC-G
* * * *
56464 AATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCATT
127 AATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATT
* * * * *
56529 GTGGCTGAGATTTGGTTTGATGAATACAGATATTTCAAGGATTCTTTAC-GACAAAAATCATTC-
192 GTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATGCA
* **** ** * * * * *
56592 AAACTAAGTCGTGTTTACGGGACGCGTTTTAAGTCAAAAACCGTGATGGTTAATACACGATTTCA
256 AAACTGAGTCG-GGCCCCGAAATGCGTTTTTAG-CATAAACCGTGATGGTTAGTACACGATTTCG
*** ** * *
56657 GCTAAAGTTTTG-CAAAGACTAACCTGAAAGGTTTTTCCTCAAA-TTTTTGC--CAAAATACTA-
319 GCTAAA-AACTGAC-AA-A--AA-C----ATTTTTTTTCT-AAATTTTTTGCGACAATATACTAG
* * * ** *
56717 AAAAAATATATATAATTCAATGCCGAAAA-ATCT-AAAGGAATTTCACGCCTT-TAATATCGTTT
373 AAAAAA-ATATATAATTCAACGCCAAAAAGAT-TGATAGGCTTTTCA-GGCTTCTAA-A------
* * *
56779 TTCCTTTTTTTTCTCGAATTTATTTCTAATTAAATCAAAATAAGTTTCAGATGCTCGTAAAAATA
428 -T--TTTTTTTTC-CGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACA
* * * * *
56844 AATCCTTAAATCCATTATGGCTGAGATTTGGTTATATGTATATAGATATTTCAAGGAGTCTTT-C
489 AATCCTTAAATCCAATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTAC
* * * ** * * * *
56908 AACCTAAAATCATGCAAAACTGAGTTGAGGCCCCGAAACGCGTTTTTAGCTAAAAAACCATGATG
554 AA-CAAAAATCATGC-AAACTGAGTCGGGGCTACGGAACGCGTTTTTAAC-CAAAAACTATGATG
* * *
56973 GTTAGTGCATGATTTCAGCTAAAATTTTGC
616 GTTAGTACACGATTTCGGCTAAAATTTTGC
** * ** * *
57003 AATGA-TGCCCCGAAAATTTTTTCCTCAATTCTTTGCCACAAACAATACTCTA-AAAAAATAAAT
1 AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTG-C-C--ACAATACTC-AGAAAAAATATAT
* * * * * * *
57066 AAATCAACGCCATAAAAATTGAAAGGTTTTTCTCGTTTCTAGTATCGTTTTTC--TATTTTTTTT
61 AATTCAATGCCA-AAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTT
* * * * * *
57129 CGAATTTATTTTTAAGTAAATAGAAACAATATTCATATGCTCATAAAAACAAATT-TTTAAATCC
125 CGAATTTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAAC-AATTCCTTAAATCC
* * * *
57193 ATTGTGGCTGAGGTTTGATTAGATGAATATAGATATTTCAAGGAGTATTCCTGCCAAAAATCATG
189 ATTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATG
* * *
57258 CAAAACTGAGCCGGGACCCCGAAATGCATTTATAGCCA-AGAACCGTGATGGTTAGTACACGATT
254 CAAAACTGAGTCGGG-CCCCGAAATGCGTTTTTAG-CATA-AACCGTGATGGTTAGTACACGATT
* * * *** *
57322 TCGGCTAAAAACTGACCAAAA-ATTTTTTTTCTAACTATTTTAATAC-A-ATACTTAGAAAAAAG
316 TCGGCTAAAAACTGACAAAAACATTTTTTTTCTAAATTTTTTGCGACAATATAC-TAGAAAAAAA
* * * * *
57384 CATATAATTTAACGCCAAAAAAATTGATGGGCTTTTTAGGCTTCTAAAGTTTTTTCCATTTTTCC
380 TATATAATTCAACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCTAAA---TTTT---TTTTTCC
* * * * *
57449 TAATTTATTTCTAATTTAATCAAAACAAGATTTAGATGTTCGTAAAAACAAATACTTAAATCCAA
439 GAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA
* *
57514 TGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTTCAACAAAAATCCTGCA
504 TGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGCA
** * * *
57579 ATTTGAGTAGGGGCTACGGAACGCGTTTTTAACCTAAAACTGTGATGGTTAGTACACGATTTCGG
569 AACTGAGTCGGGGCTACGGAACGCGTTTTTAACCAAAAACTATGATGGTTAGTACACGATTTCGG
57644 CTAAAATTTTGC
634 CTAAAATTTTGC
*
57656 AAAAACTGACCCGAAAAACTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
1 AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
*
57721 AATGCCAAAAAATTTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTACGAAT
66 AATGCCAAAAAA-TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTTCGAAT
* * **
57786 TTATTTCTAATTAAATTGAAACAATATTCAGATGCTCGTAAAAGCAATTCCTTAAATGAATTGTG
130 TTATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATTGTG
* *
57851 GCTGACACTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAAC
195 GCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAAC
* * * *
57916 TGAG-CGGGCCCCGAAATGCGTTTTTAGGATAAAGCCGTTATGATTAGTACACGATTTTGGC-AA
260 TGAGTCGGGCCCCGAAATGCGTTTTTAGCATAAA-CCGTGATGGTTAGTACACGATTTCGGCTAA
* *** ** *
57979 AAACTAACCCCAATTTTTTTTTTCTGAATTTTTTG-G-CACA-ATACTA-AGAAAAAATATATAA
324 AAACTGACAAAAACATTTTTTTTCTAAATTTTTTGCGACA-ATATACTAGA-AAAAAATATATAA
* * *
58040 TTCAACGCCAAAACGATTGATAGGCTTTTCATGCTTCTAAAAGTTTTTTTCAATTTTTTTTTCAG
387 TTCAACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCT---A---------AATTTTTTTTTCCG
* * * * *
58105 AATTAATTTCTAATTAAATAAATAAAAAAGATTCAGATGCTCGTAAAAACAAATTCTTAAAACCA
440 AATTTATTTCTAATTAAAT-CA-AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCA
* * * * * * *
58170 ATGTGGCGGAGATTTGGTTTGATGAATATAGATATTTCAAGGA-TTTTTACGA-AAAAGTCATTC
503 ATGTGGCTGAGATTTGGTTTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGC
** * ** * *
58233 AAACTGAGTCGGGTTTACGGAACGCG-TTTTAAGGCAAAAACTGCGATAGTTAATACACGATTTC
568 AAACTGAGTCGGGGCTACGGAACGCGTTTTTAA-CCAAAAACTATGATGGTTAGTACACGATTTC
*
58297 GGCTAAAGTTTTGC
632 GGCTAAAATTTTGC
58311 -AAAACTGACCCGAAA
1 AAAAACTGACCCGAAA
58326 GGTTTT
Statistics
Matches: 6351, Mismatches: 1076, Indels: 927
0.76 0.13 0.11
Matches are distributed among these distances:
635 2 0.00
636 3 0.00
637 7 0.00
638 6 0.00
639 57 0.01
640 19 0.00
641 208 0.03
642 219 0.03
643 17 0.00
644 52 0.01
645 467 0.07
646 195 0.03
647 248 0.04
648 121 0.02
649 124 0.02
650 128 0.02
651 40 0.01
652 212 0.03
653 333 0.05
654 208 0.03
655 419 0.07
656 595 0.09
657 461 0.07
658 257 0.04
659 91 0.01
660 177 0.03
661 127 0.02
662 111 0.02
663 219 0.03
664 66 0.01
665 73 0.01
666 88 0.01
667 362 0.06
668 261 0.04
669 108 0.02
670 72 0.01
671 15 0.00
672 20 0.00
673 22 0.00
674 34 0.01
675 26 0.00
676 7 0.00
677 11 0.00
678 9 0.00
679 3 0.00
680 8 0.00
681 5 0.00
682 11 0.00
683 23 0.00
684 4 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (645 bp):
AAAAACTGACCCGAAAAAGTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTC
AATGCCAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAATTTTTTTTTTCGAATT
TATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAATTCCTTAAATCCATTGTGG
CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACT
GAGTCGGGCCCCGAAATGCGTTTTTAGCATAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
ACTGACAAAAACATTTTTTTTCTAAATTTTTTGCGACAATATACTAGAAAAAAATATATAATTCA
ACGCCAAAAAGATTGATAGGCTTTTCAGGCTTCTAAATTTTTTTTTCCGAATTTATTTCTAATTA
AATCAAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGT
TTTATGAATATAAATATTTCAAGGAGTCTTTACAACAAAAATCATGCAAACTGAGTCGGGGCTAC
GGAACGCGTTTTTAACCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAATTTTGC
Done.