Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014127.1 Corchorus olitorius cultivar O-4 contig14160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49290
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:304 original size:21 final size:19
Alignment explanation
Indices: 260--318 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 19
250 CTGTTTAGCA
260 ACTGTACAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
* *
279 ACTGTACAAATTAGATTAGGT
1 ACTGTACAGATGAGATTA--T
300 ACTGTACAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
319 TAGAGCAGCG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAT
Found at i:4304 original size:25 final size:26
Alignment explanation
Indices: 4276--4328 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
4266 GTTCTTATAA
4276 GCTTTATCTTTATTG-TTAATTAATC
1 GCTTTATCTTTATTGTTTAATTAATC
4301 GCTTTATCTTTATTGTTTAATTAATC
1 GCTTTATCTTTATTGTTTAATTAATC
4327 GC
1 GC
4329 AACAATTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.23, C:0.13, G:0.09, T:0.55
Consensus pattern (26 bp):
GCTTTATCTTTATTGTTTAATTAATC
Found at i:8490 original size:16 final size:16
Alignment explanation
Indices: 8469--8502 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8459 GTTTTTACAA
8469 CAGCAATTCGAAAAAG
1 CAGCAATTCGAAAAAG
8485 CAGCAATTCGAAAAAG
1 CAGCAATTCGAAAAAG
8501 CA
1 CA
8503 ATGCTCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.21, G:0.18, T:0.12
Consensus pattern (16 bp):
CAGCAATTCGAAAAAG
Found at i:12784 original size:46 final size:46
Alignment explanation
Indices: 12717--12808 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
12707 GCCATGTTGG
*
12717 ACTGGTCCTGTTTTGGTCAGTCAGTTGCAACCTTGAACTGATCATC
1 ACTGGTCCTATTTTGGTCAGTCAGTTGCAACCTTGAACTGATCATC
*
12763 ACTGGTCCTATTTTGGTCAGTCAGTTGTAACCTTGAACTGATCATC
1 ACTGGTCCTATTTTGGTCAGTCAGTTGCAACCTTGAACTGATCATC
12809 TGATCTTTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (46 bp):
ACTGGTCCTATTTTGGTCAGTCAGTTGCAACCTTGAACTGATCATC
Found at i:16023 original size:19 final size:20
Alignment explanation
Indices: 15999--16056 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
15989 CTGTTTGGCA
15999 ACTGTACAGATGAGATTA-C
1 ACTGTACAGATGAGATTAGC
* *
16018 ACTGTACAGATTAGATTATGT
1 ACTGTACAGATGAGATTA-GC
*
16039 ACTATACAGATGAGATTA
1 ACTGTACAGATGAGATTA
16057 TTAGAGCAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 17 0.52
21 16 0.48
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
ACTGTACAGATGAGATTAGC
Found at i:18140 original size:51 final size:52
Alignment explanation
Indices: 18021--18163 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 52
18011 CGGTGCTCGT
*
18021 AAATTACATTAGATTCTGACTAAT-TCAGAATCGAGTCATGTCTGACTCTAGATAAG
1 AAATTACATTAGATTCTGACTAATCT-AAAATCGAGTCA----TGACTCTAGATAAG
* * *
18077 AAATCACTTTAGATTCTGATTAATCTAAAATCGAGTCA-GACTCTAGATAAG
1 AAATTACATTAGATTCTGACTAATCTAAAATCGAGTCATGACTCTAGATAAG
* * **
18128 AAGTTACATTAGATTCCGACTAATCCGAAATCGAGT
1 AAATTACATTAGATTCTGACTAATCTAAAATCGAGT
18164 TATGTCCGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
51 42 0.56
56 32 0.43
57 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (52 bp):
AAATTACATTAGATTCTGACTAATCTAAAATCGAGTCATGACTCTAGATAAG
Found at i:31721 original size:19 final size:20
Alignment explanation
Indices: 31691--31754 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
31681 TTGACACTGT
31691 TTAGCAACTGTACATATGAGA
1 TTAGC-ACTGTACATATGAGA
* *
31712 TTA-CACTGTACAGATTAGA
1 TTAGCACTGTACATATGAGA
* *
31731 ATAGGTACTGTACATATGAGA
1 TTA-GCACTGTACATATGAGA
31752 TTA
1 TTA
31755 TTAGAGCAGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
19 15 0.44
20 1 0.03
21 18 0.53
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
TTAGCACTGTACATATGAGA
Found at i:38038 original size:15 final size:16
Alignment explanation
Indices: 38018--38050 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
38008 TCACCCACAG
38018 TTTTTAC-TATATTAA
1 TTTTTACATATATTAA
*
38033 TTTTTACATTTATTAA
1 TTTTTACATATATTAA
38049 TT
1 TT
38051 CAATCAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTACATATATTAA
Found at i:39712 original size:18 final size:18
Alignment explanation
Indices: 39689--39723 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
39679 TGATAACGTC
39689 TAGGAACATGTACTGCTG
1 TAGGAACATGTACTGCTG
39707 TAGGAACATGTACTGCT
1 TAGGAACATGTACTGCT
39724 TTCTTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (18 bp):
TAGGAACATGTACTGCTG
Found at i:44506 original size:42 final size:42
Alignment explanation
Indices: 44446--44527 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
44436 TAGACATGAA
*
44446 AATTAGCCAACCAATACAACTTGTAATGCCTAAAAATGTTGG
1 AATTAGCCAACCAATACAACTTGTAACGCCTAAAAATGTTGG
* * *
44488 AATTAGTCAA-CAAGTACAATTTGTAACGCCTGAAAATGTT
1 AATTAGCCAACCAA-TACAACTTGTAACGCCTAAAAATGTT
44528 ATTAGCCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (42 bp):
AATTAGCCAACCAATACAACTTGTAACGCCTAAAAATGTTGG
Found at i:46859 original size:331 final size:330
Alignment explanation
Indices: 45927--47517 Score: 1723
Period size: 332 Copynumber: 4.8 Consensus size: 330
45917 CCTAGAAGAC
* ** * *
45927 ATTTACTCAATTTTTGTTTAAAATACTTATAAAAAATATATACTTCAACGCCAAAAAGATTGAAG
1 ATTTCCTCAA-TTTTGGATAAAATACTCAT-AAAAATATATAATTCAACGCCAAAAAGATTGAAG
*
45992 GGCTTTTGACGTTTCCAATACCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
64 GGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
* *
46057 CAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTTATTAGACAAA
129 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGACAAA
*
46122 TATAGATATTTCAAGAAGTCTTGGAGCAAAAACTCATGCAAAATTGAGCCGGGTCTCCGGAATGC
194 TATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGC
** * * * * * *
46187 GTTTTTAGCCAAAAACCGTGATGGTTAGTACACCATTTTGGCTAGAACATTGCAAAAAATGACCC
259 GTTTTTAGCCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAACTTTGCAAAAAATGATCA
* *
46252 GTAAATT
324 GAAAAAT
* * * * * * * *
46259 TTTTCCCCTATTTCTTGATAAAATACTCATAAAATATATATAATTTAACACCAAAAGGATGGGAA
1 ATTTCCTCAATTT-TGGATAAAATACTCATAAAA-ATATATAATTCAACGCCAAAAAGAT-TGAA
** * * * * ** * * *
46324 -AACTTTTCACACTTT-TAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTGATAAAATTGA
63 GGGCTTTTGAC-GTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGA
* * * ** * * **
46386 AACAAGATTCAGAAGCTTGT-AAAA-AAATTCTTAAATATAACGCGGCTGAGATTTGATTAGATG
127 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGACA
* * * * * * * * * * *
46449 AATATGGATATCTCAAGGAGTGTTGGGGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCAGAAT
192 AATATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAAT
* * * * * *
46514 GCTTTTTTAGCCAAAAATTATGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGAT
257 GCGTTTTTAGCCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAACTTTGCAAAAAATGAT
*
46579 TAGAAAAAT
322 CAGAAAAAT
* * *
46588 ATTTCCTCAATTTTAGGCTAAAATACTAATAAAAATATATAATTCAACGCCAAAAATATTGAAGG
1 ATTTCCTCAATTTT-GGATAAAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGG
*
46653 GCTTTTGACGTTTCCAATATCATTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAAC
65 GCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAAC
* *
46718 AAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTCGCTGAGATTTGATTAGAAAAAT
130 AAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGACAAAT
* * *
46783 ATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCAAAATTAAGCCGGGTCTCCGGAACGCG
195 ATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGCG
*
46848 TTTTTAGCCAAAAACTATGATGGTTAGTACACGATTTTGGCTAAAACTTTGCAAAAAATGA-CAG
260 TTTTTAGCCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAACTTTGCAAAAAATGATCA-
*
46912 GAAAATT
324 GAAAAAT
* * * * * * * *
46919 TTTTCCCCTATTTCTTGATAAAATACTCATAAAATATATATAATTTAACTCCAAAAGGATTGGAG
1 ATTTCCTCAATTT-TGGATAAAATACTCATAAAA-ATATATAATTCAACGCCAAAAAGATTGAAG
** * * * * * * *
46984 AACTTTTTACGCTTT-AAATATCGTATTTCATATTTTTGT--GAATTAATTTCTGATAAAATCGA
64 GGCTTTTGACG-TTTCCAATATCGTTTTTCCTATTTTT-TCCAAATTAATTTCTAATTAAATCGA
** * * * ** * * *
47046 AACAAGATTCACCTGCTTGTAAAAAAAATATTCTTAAATATAATGTGGCCGAGATTTTATTAGAT
127 AACAAGATTCAGATGCTCGTAAAAACAA-ATCCTTAAATCCAATGTGGCTGAGATTTGATTAGAC
* * * * * * * * * * * *
47111 GAATAT-GAATATCTCAAGGAGTGTTGGTGCCAATAATCATGCAAAACTGAGCTGGGACCCCAGA
191 AAATATAG-ATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGA
* * * * * * *
47175 ACGC-TTTTGTAGCAAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAA-TTTGGTAGAAAT
255 ATGCGTTTT-TAGCCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAACTTT-GCAAAAAA
*
47238 TGATTAGAAAAAT
318 TGATCAGAAAAAT
* * *
47251 ATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATAATTCAACGCCAAAAATATTGAAG
1 ATTTCCTCAATTTT-GGATAAAATACTCAT-AAAAATATATAATTCAACGCCAAAAAGATTGAAG
* *
47316 GGCTTTTGACGTTTCCAATATGGTTTTTCCTATATTTTCCAAATTAATTTCTAATTAAATCGAAA
64 GGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAA
* * * *
47381 CAAGATTCAGATGCTCCTAAAAGCAGATCCTTAAATCCAATGTGGCTGAGATTTAATTAGACAAA
129 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGACAAA
* *
47446 TATAGATATTTCAAGAAGTCTTGGAG-AAAAAATCATGCAAAATTGAGTCGGGTCTCTGGAATGC
194 TATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGC
47510 GTTTTTAG
259 GTTTTTAG
47518 ATGAATATGG
Statistics
Matches: 1008, Mismatches: 224, Indels: 55
0.78 0.17 0.04
Matches are distributed among these distances:
327 6 0.01
328 43 0.04
329 210 0.21
330 9 0.01
331 309 0.31
332 374 0.37
333 57 0.06
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (330 bp):
ATTTCCTCAATTTTGGATAAAATACTCATAAAAATATATAATTCAACGCCAAAAAGATTGAAGGG
CTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACA
AGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGACAAATA
TAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGCGT
TTTTAGCCAAAAACTATGATGGTTAGTACACGATTTCGGCTAAAACTTTGCAAAAAATGATCAGA
AAAAT
Found at i:46875 original size:660 final size:661
Alignment explanation
Indices: 45631--47517 Score: 2740
Period size: 660 Copynumber: 2.9 Consensus size: 661
45621 CCAATCTTTG
* * * ** * *
45631 GATAAAATACTTATAAAACATATATAATTTGATGCCTAAAA-GATTGGAGGAGTTTTCACGCTTT
1 GATAAAATACTCATAAAATATATATAATTTAACACC-AAAAGGATTGGAGAACTTTTCACGCTTT
* * * *
45695 TAATATTGTTATTCATATTTTTTTGAATTAATTTCT-AGTTAAATCGAAACAAGATTCAGATGCT
65 TAATATCGTTTTTCATATTTTTCTGAATTAATTTCTGA-TAAAATCGAAACAAGATTCAGATGCT
* ** * *
45759 CGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATGGAAATCTTAAG
129 TGTAAAAA-AAATTCTTAAATATAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAG
* * * * * * * *
45824 GAGTCTT-GACCCAAAAATCATGCAAATCTGAGTTGGGGCCTCGGAACACTTTTTTA-ACAAAAA
193 GAGTGTTGGAGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCAGAACGCTTTTTTAGCCAAAAA
* ** * * *
45887 CTGTGACGGTTATTACACGATTTC-G-----A--TCG----A---CCTAG-AAGACATTTACTCA
258 CTGTGATGGTTATTACACGATTTCGGCTAAAATTTCGTAAAATTGATTAGAAAAATATTTCCTCA
* ** * *
45936 ATTTTTGTTTAAAATACTTATAAAAAATATATACTTCAACGCCAAAAAGATTGAAGGGCTTTTGA
323 ATTTTAGGCTAAAATACTTATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTGA
* *
46001 CGTTTCCAATACCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTTA
388 CGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCA
*
46066 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTTATTAGACAAATATAGATAT
453 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAATTAGACAAATATAGATAT
*
46131 TTCAAGAAGTCTTGGAGCAAAAACTCATGCAAAATTGAGCCGGGTCTCCGGAATGCGTTTTTAGC
518 TTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGCGTTTTTAGC
* * * *
46196 CAAAAACCGTGATGGTTAGTACACCATTTTGGCTAGAACATTGCAAAAAATGACCCGTAAATTTT
583 CAAAAACCATGATGGTTAGTACACCATTTTGGCTAAAACATTGCAAAAAATGACACGAAAATTTT
46261 TTCCCCTATTTCTT
648 TTCCCCTATTTCTT
* * *
46275 GATAAAATACTCATAAAATATATATAATTTAACACCAAAAGGATGGGAAAACTTTTCACACTTTT
1 GATAAAATACTCATAAAATATATATAATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTT
* *
46340 AATATCGTTTTTCATATTTTTCTGAATTAATTTCTGATAAAATTGAAACAAGATTCAGAAGCTTG
66 AATATCGTTTTTCATATTTTTCTGAATTAATTTCTGATAAAATCGAAACAAGATTCAGATGCTTG
* *
46405 T-AAAAAAATTCTTAAATATAACGCGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAG
131 TAAAAAAAATTCTTAAATATAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAG
* * * *
46469 TGTTGGGGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCAGAATGCTTTTTTAGCCAAAAATTA
196 TGTTGGAGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCAGAACGCTTTTTTAGCCAAAAACTG
*
46534 TGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGATTAGAAAAATATTTCCTCAAT
261 TGATGGTTATTACACGATTTCGGCTAAAATTTCGT-AAAATTGATTAGAAAAATATTTCCTCAAT
*
46599 TTTAGGCTAAAATACTAAT-AAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTGACG
325 TTTAGGCTAAAATACTTATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTGACG
*
46663 TTTCCAATATCATTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
390 TTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGA
* * *
46728 TGCTCGTAAAAACAAATCCTTAAATCCAATGTCGCTGAGATTTGATTAGAAAAATATAGATATTT
455 TGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAATTAGACAAATATAGATATTT
* * *
46793 CAAGTAGTCTTGGAGCAAAAAATCATGCAAAATTAAGCCGGGTCTCCGGAACGCGTTTTTAGCCA
520 CAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGCGTTTTTAGCCA
* * * *
46858 AAAACTATGATGGTTAGTACACGATTTTGGCTAAAACTTTGCAAAAAATGACAGGAAAATTTTTT
585 AAAACCATGATGGTTAGTACACCATTTTGGCTAAAACATTGCAAAAAATGACACGAAAATTTTTT
46923 CCCCTATTTCTT
650 CCCCTATTTCTT
* * *
46935 GATAAAATACTCATAAAATATATATAATTTAACTCCAAAAGGATTGGAGAACTTTTTACGCTTTA
1 GATAAAATACTCATAAAATATATATAATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTT
* * **
47000 AATATCGTATTTCATATTTTTGTGAATTAATTTCTGATAAAATCGAAACAAGATTCACCTGCTTG
66 AATATCGTTTTTCATATTTTTCTGAATTAATTTCTGATAAAATCGAAACAAGATTCAGATGCTTG
* * *
47065 TAAAAAAAATATTCTTAAATATAATGTGGCCGAGATTTTATTAGATGAATATGAATATCTCAAGG
131 T-AAAAAAA-ATTCTTAAATATAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGG
* * * * *
47130 AGTGTTGGTGCCAATAATCATGCAAAACTGAGCTGGGACCCCAGAACGCTTTTGTAGCAAAAAAC
194 AGTGTTGGAGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCAGAACGCTTTTTTAGCCAAAAAC
*
47195 TGTGATGGTTATTACACGATTTCGGCTAAAATTTGGTAGAAATTGATTAGAAAAATATTTCCTCA
259 TGTGATGGTTATTACACGATTTCGGCTAAAATTTCGTA-AAATTGATTAGAAAAATATTTCCTCA
47260 ATTTTAGGCTAAAATACTTATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTGA
323 ATTTTAGGCTAAAATACTTATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTGA
* *
47325 CGTTTCCAATATGGTTTTTCCTATATTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCA
388 CGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCA
* * *
47390 GATGCTCCTAAAAGCAGATCCTTAAATCCAATGTGGCTGAGATTTAATTAGACAAATATAGATAT
453 GATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAATTAGACAAATATAGATAT
* *
47455 TTCAAGAAGTCTTGGAG-AAAAAATCATGCAAAATTGAGTCGGGTCTCTGGAATGCGTTTTTAG
518 TTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGCGTTTTTAG
47518 ATGAATATGG
Statistics
Matches: 1110, Mismatches: 107, Indels: 33
0.89 0.09 0.03
Matches are distributed among these distances:
642 56 0.05
643 49 0.04
644 134 0.12
645 2 0.00
650 1 0.00
652 2 0.00
657 1 0.00
660 419 0.38
661 28 0.03
662 7 0.01
663 231 0.21
664 180 0.16
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (661 bp):
GATAAAATACTCATAAAATATATATAATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTT
AATATCGTTTTTCATATTTTTCTGAATTAATTTCTGATAAAATCGAAACAAGATTCAGATGCTTG
TAAAAAAAATTCTTAAATATAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAG
TGTTGGAGCCAAAAATCATGCAAAACTGAGCTGGGGCCCCAGAACGCTTTTTTAGCCAAAAACTG
TGATGGTTATTACACGATTTCGGCTAAAATTTCGTAAAATTGATTAGAAAAATATTTCCTCAATT
TTAGGCTAAAATACTTATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTGACGT
TTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGAT
GCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAATTAGACAAATATAGATATTTC
AAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGCCGGGTCTCCGGAATGCGTTTTTAGCCAA
AAACCATGATGGTTAGTACACCATTTTGGCTAAAACATTGCAAAAAATGACACGAAAATTTTTTC
CCCTATTTCTT
Found at i:47592 original size:77 final size:77
Alignment explanation
Indices: 47444--47595 Score: 169
Period size: 78 Copynumber: 2.0 Consensus size: 77
47434 TAATTAGACA
* * * * * * * ** *
47444 AATATAGATATTTCAAGAAGTCTTGGAGAAAAAATCATGCAAAATTGAGTCGGGTCTCTGGAATG
1 AATATAGATATCTCAAGAAGTCTTGGACAAAAAATCACGCAAAACTGAGACGGGGCCCAAGAACG
47509 CGTTTTTAGATG
66 CGTTTTTAGATG
* * *
47521 AATATGGATATCTCAAGGAGTCTTGGTACCAAAAATCACGCAAAACTGAGACGGGGCCCAAGAAC
1 AATATAGATATCTCAAGAAGTCTTGG-ACAAAAAATCACGCAAAACTGAGACGGGGCCCAAGAAC
*
47586 GCTTTTTTAG
65 GCGTTTTTAG
47596 CAAAAAACTG
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
77 23 0.38
78 37 0.62
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (77 bp):
AATATAGATATCTCAAGAAGTCTTGGACAAAAAATCACGCAAAACTGAGACGGGGCCCAAGAACG
CGTTTTTAGATG
Found at i:47864 original size:409 final size:410
Alignment explanation
Indices: 47105--47927 Score: 1364
Period size: 409 Copynumber: 2.0 Consensus size: 410
47095 CGAGATTTTA
* * * *
47105 TTAGATGAATATGAATATCTCAAGGAGTGTTGGTGCCAATAATCATGCAAAACTGAGCTGGGACC
1 TTAGATGAATATGAATATCTCAAGGAGTCTTGGTACCAAAAATCACGCAAAACTGAGCTGGGACC
* *
47170 CCAGAACGCTTTTGTAGCAAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTGGTAGA
66 CAAGAACGCTTTTGTAGCAAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTGGTAGA
*
47235 AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATAATTCAAC
131 AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACATATAAAAAATATATAATTCAAC
* *
47300 GCCAAAAATATTGAAGGGCTTTTGACGTTTCCAATATGGTTTTTCCTATATTTTCCAAATTAATT
196 GCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATATTTTCCAAATTAATT
* *
47365 TCTAATTAAATCGAAACAAGATTCAGATGCTCCTAAAAGCAGATCCTTAAATCCAATGTGGCTGA
261 TCTAATTAAATCGAAACAAGATTCAGATGCTCCTAAAAACAAATCCTTAAATCCAATGTGGCTGA
*
47430 GATTTAATTAGACAAATATAGATATTTCAAGAAGTCTTGGAG-AAAAAATCATGCAAAATTGAGT
326 GATTTAATTAGACAAATATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGC
* *
47494 CGGGTCTCTGGAATGCGTTT
391 CGGGTCTCCGGAACGCGTTT
* *
47514 TTAGATGAATATGGATATCTCAAGGAGTCTTGGTACCAAAAATCACGCAAAACTGAGAC-GGGGC
1 TTAGATGAATATGAATATCTCAAGGAGTCTTGGTACCAAAAATCACGCAAAACTGAG-CTGGGAC
* *
47578 CCAAGAACGCTTTTTTAGCAAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTA-
65 CCAAGAACGCTTTTGTAGCAAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTGGTAG
* *
47642 AGAATTGATTAGAAAAATATTTCCTTAATTTTAGGCTAAAATACATATAAAAAATATATATTTCA
130 A-AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACATATAAAAAATATATAATTCA
* *
47707 ACGCCAAAAAGATTGAATGGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAA
194 ACGCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATATTTTCCAAATTAA
* *
47772 TTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCT
259 TTTCTAATTAAATCGAAACAAGATTCAGATGCTCCTAAAAACAAATCCTTAAATCCAATGTGGCT
* * *
47837 GAGATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGA
324 GAGATTTAATTAGACAAATATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGA
47902 GCCGGGTCTCCGGAACGCGTTT
389 GCCGGGTCTCCGGAACGCGTTT
47924 TTAG
1 TTAG
47928 CCAAAAACCG
Statistics
Matches: 384, Mismatches: 27, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
408 1 0.00
409 340 0.89
410 43 0.11
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (410 bp):
TTAGATGAATATGAATATCTCAAGGAGTCTTGGTACCAAAAATCACGCAAAACTGAGCTGGGACC
CAAGAACGCTTTTGTAGCAAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTGGTAGA
AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACATATAAAAAATATATAATTCAAC
GCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATATTTTCCAAATTAATT
TCTAATTAAATCGAAACAAGATTCAGATGCTCCTAAAAACAAATCCTTAAATCCAATGTGGCTGA
GATTTAATTAGACAAATATAGATATTTCAAGAAGTCTTGGAGCAAAAAATCATGCAAAATTGAGC
CGGGTCTCCGGAACGCGTTT
Found at i:48950 original size:663 final size:661
Alignment explanation
Indices: 47514--49289 Score: 2954
Period size: 663 Copynumber: 2.7 Consensus size: 661
47504 GAATGCGTTT
* ** * *
47514 TTAGATGAATATGGATATCTCAAGGAGTCTTGGTACCAAAAATCACGCAAAACTGAGAC-GGGGC
1 TTAGATGAATACGGATATCTCAAGGAGAATTGGTGCCAAAAATCATGCAAAACTGAGACGGGGGC
*
47578 CCAAGAACGCTTTTTTAGCAAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTAA
66 CC-AGAACGCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTAA
* * *
47643 GAATTGATTAGAAAAATATTTCCTTAATTTTAGGCTAAAATACATATAAAAAATATATATTTCAA
130 AAATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATATTTCAA
*
47708 CGCCAAAAAGATTGAATGGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAAT
195 CGCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAAT
*
47773 TTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTG
260 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT-CAATGTGGCTG
47838 AGATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAG
324 AGATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAG
47903 CCGGGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAAC
389 CCGGGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAAC
* * * * *
47968 TTTGCAAAAAATGACCCTAAGAATTTTTCCCCTTATTTCTTGATAAAATACTCATAAAATATATA
454 CTTGCAAAAAATGACCCGAAAAATTTTTCCCCTTATTTCTTAAGAAAATACTCATAAAATATATA
*
48033 ATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAA
519 ATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTTAATATCGTTTTTCATATTTATCTGAA
* * *
48098 TTAATTTCTAATAAAATCGGAACAAGATTCAGATGGTTGTAAAAACAAATTCTTAAACCCTATGT
584 TTAATTTCTAAGAAAATCGGAACAAGATTCAGATGCTTGTAAAAACAAATTCTTAAAACCTATGT
* *
48163 GACTGAGATTTGA
649 GACTCAAATTTGA
* ** * *
48176 TTAGATGAATATGGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGACGGGGCC
1 TTAGATGAATACGGATATCTCAAGGAGAATTGGTGCCAAAAATCATGCAAAACTGAGACGGGGGC
* *
48241 CCAGAACGCTTTTTTAGCCAAAAATTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAA
66 CCAGAACGCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTAAA
*
48306 AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATATTTCAAT
131 AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATATTTCAAC
*
48371 GCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATACCGTTTTTCCTATTTTTTCCAAATTAATT
196 GCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATT
* * *
48436 TCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTCAATCAATATGGCTGAG
261 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCAATGTGGCTGAG
48501 ATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAGCC
326 ATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAGCC
*
48566 GGGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTTTGGCTAAAACCT
391 GGGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAACCT
* *
48631 TGCAAAAAATGACTCGAAAAATTTTTCCCCTTATTTCTTAAGAAACTACTCATAAAATATATATA
456 TGCAAAAAATGACCCGAAAAATTTTTCCCCTTATTTCTTAAGAAAATACTCAT-AAA-ATATATA
*
48696 ATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTTAATATTGTTTTTCATATTTATCTGAA
519 ATTTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTTAATATCGTTTTTCATATTTATCTGAA
*
48761 TTAATTTCTAAGAAAATCGGAACAAGATTCAGATGCTTGTAAAAACAAATTCTTAAATATC-ATG
584 TTAATTTCTAAGAAAATCGGAACAAGATTCAGATGCTTGTAAAAACAAATTCTTAAA-ACCTATG
*
48825 TGGCTCAAATTTGA
648 TGACTCAAATTTGA
* *
48839 TTAGATGAATACGGA-ACTCTCGAGGGGAATTGGTGCCAAAAATCATGCAAAACTGAG-CTGGGG
1 TTAGATGAATACGGATA-TCTCAAGGAGAATTGGTGCCAAAAATCATGCAAAACTGAGAC-GGGG
* *
48902 GCCCATAACGCTTTTTTAGCCAAAAACTGTGATGCTTATTACACGATTTCAGCTAAAATTTTGTA
64 GCCCAGAACGCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTA
*
48967 AAAATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAACATATATTTCA
129 AAAATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATATTTCA
* *
49032 ACGCCAAAAAGATTAAAGGGATTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAA
194 ACGCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAA
* * *
49097 TTTCTAATTAAATCGGAACAAGATTCATATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGAT
259 TTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATC-AATGTGGCT
* *
49162 GAGATTTGATTAGAAAAATATAG--ATTTCAAGTAGTCTTGGAGCAAAAAATCATGCAAAATTGA
323 GAGATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGA
*
49225 GTC-GGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAA
388 GCCGGGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAA
49289 C
453 C
49290 T
Statistics
Matches: 1047, Mismatches: 60, Indels: 15
0.93 0.05 0.01
Matches are distributed among these distances:
661 248 0.24
662 335 0.32
663 434 0.41
664 30 0.03
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (661 bp):
TTAGATGAATACGGATATCTCAAGGAGAATTGGTGCCAAAAATCATGCAAAACTGAGACGGGGGC
CCAGAACGCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTAAA
AATTGATTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATATTTCAAC
GCCAAAAAGATTGAAGGGCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATT
TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCAATGTGGCTGAG
ATTTGATTAGACAAATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAGCC
GGGTCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAACCT
TGCAAAAAATGACCCGAAAAATTTTTCCCCTTATTTCTTAAGAAAATACTCATAAAATATATAAT
TTAACACCAAAAGGATTGGAGAACTTTTCACGCTTTTAATATCGTTTTTCATATTTATCTGAATT
AATTTCTAAGAAAATCGGAACAAGATTCAGATGCTTGTAAAAACAAATTCTTAAAACCTATGTGA
CTCAAATTTGA
Found at i:48959 original size:332 final size:331
Alignment explanation
Indices: 47521--49288 Score: 1935
Period size: 332 Copynumber: 5.3 Consensus size: 331
47511 TTTTTAGATG
* * *
47521 AATATGGATATCTCAAGGAGTCTTGGTA-CCAAAAATCACGCAAAACTGAGACGGGGCCCAAGAA
1 AATATAGATATCTCAAGGAGTCTTGG-AGCCAAAAATCATGCAAAACTGAGCCGGGGCCC-AGAA
* * *
47585 CGCTTTTTTAGCAAAAAACTGTGATGGTTATTACACGATTTCAGCTAAAATTTTGTAAGAATTGA
64 CGCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGA
47650 TTAGAAAAATATTTCCTTAATTTTAGGCTAAAATACAT-ATAAAAAATATATATTTCAACGCCAA
129 TTAGAAAAATATTTCCTTAATTTTAGGC-AAAATAC-TCATAAAAAATATATATTTCAACGCCAA
*
47714 AAAGATTGAATG-GCTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTA
192 AAAGATTGAA-GAACTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTA
* * *
47778 ATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATCCTTAAAT-CCAATGTGGCTGAGAT
256 ATTAAATCGGAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATATCAATGTGGCTGAGAT
47842 TTGATTAGACA
321 TTGATTAGACA
* * * * * * *
47853 AATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAGCCGGGTCTCCGGAAC
1 AATATAGATATCTCAAGGAGTCTTGGAGCCAAAAATCATGCAAAACTGAGCCGGGGC-CCAGAAC
* * * * * * * *
47918 GCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAACTTTGCAAAAAATGAC
65 GCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGAT
*** * * * ** * *
47983 CCTAAGAATTTTTCCCCTT-ATTTCTTGATAAAATACTCATAAAATATATA-ATTT-AACACCAA
130 TAGAAAAATATTT--CCTTAATTT-TAGGCAAAATACTCATAAAAAATATATATTTCAACGCCAA
* * * * * **
48045 AAGGATTGGAGAACTTTTCACGCTTT-TAATATCGTTTTTCATA-TTTTTCTGAATTAATTTCTA
192 AAAGATTGAAGAACTTTTGACG-TTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTA
* * * * ** * *
48108 ATAAAATCGGAACAAGATTCAGATGGTTGTAAAAACAAATTCTTAAA-CCCTATGTGACTGAGAT
256 ATTAAATCGGAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATATCAATGTGGCTGAGAT
**
48172 TTGATTAGATG
321 TTGATTAGACA
* * *
48183 AATATGGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGACGGGGCCCCAGAAC
1 AATATAGATATCTCAAGGAGTCTTGGAGCCAAAAATCATGCAAAACTGAGCCGGGG-CCCAGAAC
*
48248 GCTTTTTTAGCCAAAAATTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGAT
65 GCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGAT
* * *
48313 TAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAATATATATTTCAATGCCAAAA
130 TAGAAAAATATTTCCTTAATTTTAGGC-AAAATACTCATAAAAAATATATATTTCAACGCCAAAA
** *
48378 AGATTGAAGGGCTTTTGACGTTTCCAATACCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATT
194 AGATTGAAGAACTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATT
* * * *
48443 AAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTT-CA-ATCAATATGGCTGAGATTTG
259 AAATCGGAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATATCAATGTGGCTGAGATTTG
48506 ATTAGACA
324 ATTAGACA
* * * * * * *
48514 AATATAGATATTTCAAGTAGTCTTGGAGCAAAAAATCATGCTAAATTGAGCCGGGTCTCCGGAAC
1 AATATAGATATCTCAAGGAGTCTTGGAGCCAAAAATCATGCAAAACTGAGCCGGGGC-CCAGAAC
* * * * * ** * * *
48579 GCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACAATTTTGGCTAAAACCTTGCAAAAAATGAC
65 GCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGAT
* * * * * * *
48644 TCGAAAAATTTTTCCCCTTATTTCTTAAG-AAACTACTCATAAAATATATATAATTT-AACACCA
130 TAGAAAAATATTT--CCTTAATT-TTAGGCAAAATACTCATAAAAAATATAT-ATTTCAACGCCA
* * * * * * * **
48707 AAAGGATTGGAGAACTTTTCACGCTTT-TAATATTGTTTTTCATA-TTTATCTGAATTAATTTCT
191 AAAAGATTGAAGAACTTTTGACG-TTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCT
** * * * *
48770 AAGAAAATCGGAACAAGATTCAGATGCTTGTAAAAACAAATTCTTAAATATC-ATGTGGCTCAAA
255 AATTAAATCGGAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATATCAATGTGGCTGAGA
**
48834 TTTGATTAGATG
320 TTTGATTAGACA
** * * ** * * *
48846 AATACGGA-ACTCTCGAGGGGAATTGGTGCCAAAAATCATGCAAAACTGAGCTGGGGGCCCATAA
1 AATATAGATA-TCTCAAGGAGTCTTGGAGCCAAAAATCATGCAAAACTGAGC-CGGGGCCCAGAA
* *
48910 CGCTTTTTTAGCCAAAAACTGTGATGCTTATTACACGATTTCAGCTAAAATTTTGTAAAAATTGA
64 CGCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGA
* * *
48975 TTAGAAAAATATTTCCTCAATTTTAGGCTAAAATACTTATAAAAAACATATATTTCAACGCCAAA
129 TTAGAAAAATATTTCCTTAATTTTAGGC-AAAATACTCATAAAAAATATATATTTCAACGCCAAA
* *
49040 AAGATTAAAGGGA-TTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAA
193 AAGATTGAA-GAACTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAA
* * *
49104 TTAAATCGGAACAAGATTCATATGCTCGTAAAAACAAATCCTTAAATCT-AATGTGGATGAGATT
257 TTAAATCGGAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATATCAATGTGGCTGAGATT
*
49168 TGATTAGAAA
322 TGATTAGACA
* * * * * *
49178 AATATAGAT-T-TCAAGTAGTCTTGGAGCAAAAAATCATGCAAAATTGAGTC-GGTCTCCGGAAC
1 AATATAGATATCTCAAGGAGTCTTGGAGCCAAAAATCATGCAAAACTGAGCCGGGGC-CCAGAAC
* * * *
49240 GCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAA
65 GCTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAA
49289 CT
Statistics
Matches: 1160, Mismatches: 241, Indels: 73
0.79 0.16 0.05
Matches are distributed among these distances:
328 8 0.01
329 75 0.06
330 251 0.22
331 327 0.28
332 445 0.38
333 44 0.04
334 10 0.01
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (331 bp):
AATATAGATATCTCAAGGAGTCTTGGAGCCAAAAATCATGCAAAACTGAGCCGGGGCCCAGAACG
CTTTTTTAGCCAAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTTGTAAAAATTGATT
AGAAAAATATTTCCTTAATTTTAGGCAAAATACTCATAAAAAATATATATTTCAACGCCAAAAAG
ATTGAAGAACTTTTGACGTTTCCAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATTAA
ATCGGAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATATCAATGTGGCTGAGATTTGAT
TAGACA
Done.