Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014129.1 Corchorus olitorius cultivar O-4 contig14162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71340

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8477--8517
19
2.2
19
90
0
64
26
24
9
39
1.86
8798--8856
29
2.0
29
100
0
118
28
16
16
37
1.92
24145--24290
76
1.9
76
97
0
274
37
13
6
43
1.68
25890--25914
12
2.1
12
100
0
50
52
16
24
8
1.70
27460--27485
6
4.3
6
100
0
52
50
15
19
15
1.79
30054--30102
21
2.3
21
96
3
89
36
30
8
24
1.85
30609--30733
64
2.0
64
83
0
160
35
23
8
32
1.86
60300--63730
322
10.5
323
76
9
2766
34
16
14
34
1.90
63726--65771
337
6.2
334
83
5
2280
37
15
13
33
1.87
65784--66389
323
1.9
322
94
1
1061
35
12
15
36
1.85
67375--69644
324
7.0
319
84
5
2791
32
14
17
35
1.90
70143--71340
320
3.7
320
85
3
1575
33
14
17
35
1.89

Tables:   1

The End!