Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014132.1 Corchorus olitorius cultivar O-4 contig14165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76701

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120--1955
321
5.7
321
88
3
2525
32
14
17
34
1.91
120--1955
322
5.7
319
88
3
2501
32
14
17
34
1.91
24695--25438
22
33.8
22
76
5
558
37
13
17
31
1.89
27055--27084
5
6.2
5
96
3
53
23
0
16
60
1.36
35158--35209
20
2.5
20
80
20
63
5
17
1
75
1.10
58737--58828
45
2.0
45
100
0
184
35
13
6
44
1.69
62359--62432
31
2.4
31
83
0
94
40
16
16
27
1.89
69160--69185
7
3.7
7
100
0
52
61
0
15
23
1.33
69153--69192
14
2.8
14
80
3
53
65
5
12
17
1.44
70406--70435
15
2.1
14
93
6
51
46
0
0
53
1.00
70395--70435
21
2.0
21
85
9
57
48
0
0
51
1.00
73618--73667
2
27.5
2
81
18
65
52
0
0
48
1.00
73617--73682
20
3.3
20
81
12
75
51
0
3
45
1.16
73617--73682
13
5.0
12
75
17
60
51
0
3
45
1.16
75008--75042
11
3.2
11
83
0
52
77
17
5
0
0.96
75291--75338
11
4.2
11
81
5
51
75
16
6
2
1.11
75294--75344
25
2.0
25
81
7
59
74
15
7
1
1.13
75296--75344
11
4.2
11
84
10
53
75
14
8
2
1.12
74783--75355
288
2.0
293
83
7
745
43
14
11
30
1.80
75379--75420
21
2.0
22
90
4
68
50
0
11
38
1.40
75411--75475
5
12.6
5
79
9
60
55
0
1
43
1.09
75380--75425
21
2.2
21
84
7
58
52
0
8
39
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75986--76016
15
2.1
15
93
0
53
22
0
16
61
1.34

Tables:   1

The End!