Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014140.1 Corchorus olitorius cultivar O-4 contig14173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1835
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30


Found at i:1059 original size:21 final size:21

Alignment explanation


    Indices: 1033--1079  Score: 69
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1023 AGGGATCGAG

                          *       
       1033 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTGAGGCATT-TCGC

                                 
       1054 CTGGGCGCTGAGGCATTTCGC
          1 CTGGGCGCTGAGGCATTTCGC

                 
       1075 CTGGG
          1 CTGGG

       1080 AGCCCAGCGG


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  21   20  0.83
  22    4  0.17

ACGTcount: A:0.06, C:0.30, G:0.40, T:0.23


Consensus pattern (21 bp):   
CTGGGCGCTGAGGCATTTCGC
Done.