Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014141.1 Corchorus olitorius cultivar O-4 contig14174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1902
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:1201 original size:16 final size:15

Alignment explanation


    Indices: 1159--1206  Score: 53
    Period size: 16  Copynumber: 3.1  Consensus size: 15

       1149 CTCCATTTAC

                *           
       1159 TTTTTCTTTGCATTG-
          1 TTTTGCTTTG-ATTGA

                   *       
       1174 TTTTGCTCTGATTGA
          1 TTTTGCTTTGATTGA

                            
       1189 TTATTGCTTTGATTGA
          1 TT-TTGCTTTGATTGA

              
       1205 TT
          1 TT

       1207 GCCTATTCCT


Statistics
Matches: 28,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  14    4  0.14
  15   10  0.36
  16   14  0.50

ACGTcount: A:0.12, C:0.10, G:0.17, T:0.60


Consensus pattern (15 bp):   
TTTTGCTTTGATTGA

Found at i:1516 original size:25 final size:25

Alignment explanation


    Indices: 1482--1530  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1472 TAGAGAGTCT

                                     
       1482 GCATGCATCATAATCTTAAAATATG
          1 GCATGCATCATAATCTTAAAATATG

                                    
       1507 GCATGCATCATAATCTTAAAATAT
          1 GCATGCATCATAATCTTAAAATAT

       1531 ACCATAATGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33


Consensus pattern (25 bp):   
GCATGCATCATAATCTTAAAATATG
Done.