Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014142.1 Corchorus olitorius cultivar O-4 contig14175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18250

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1258--1331
27
2.7
27
82
0
85
43
27
12
17
1.84
1646--1713
31
2.2
31
100
0
136
26
17
17
38
1.92
4819--5009
52
3.7
52
89
4
255
29
19
14
36
1.91
4960--5106
37
4.1
34
76
17
152
29
14
16
40
1.88
5862--6065
30
6.8
30
84
5
243
44
21
14
20
1.86
5862--6337
60
8.1
60
82
6
562
46
19
14
20
1.84
5880--6336
90
5.2
90
81
9
557
46
19
14
20
1.84
6071--6337
30
8.9
30
84
5
308
47
17
14
20
1.83
6067--6331
91
2.9
91
83
4
358
47
18
13
20
1.83
6072--6337
121
2.2
120
88
2
383
47
18
13
20
1.82
6677--7321
36
18.1
36
85
3
786
42
18
21
17
1.90
6677--7321
107
6.0
108
86
4
822
42
18
21
17
1.90
6696--7321
143
4.4
143
91
2
911
41
18
21
18
1.90
15430--15489
29
2.0
30
87
6
86
35
18
8
38
1.81
17348--17415
21
3.2
20
79
10
73
11
20
47
20
1.81
17620--17659
21
1.9
21
84
0
53
27
17
50
5
1.67

Tables:   1

The End!