Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014145.1 Corchorus olitorius cultivar O-4 contig14178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43383

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24--222
3
65.0
3
96
4
362
66
0
0
33
0.92
10705--10762
30
1.9
30
100
0
116
46
3
24
25
1.68
12416--12457
3
14.3
3
95
5
77
30
0
0
69
0.89
13268--13302
14
2.4
15
90
4
54
0
22
2
74
0.95
17969--18035
28
2.5
26
84
11
100
17
2
7
71
1.22
18678--18712
8
4.4
8
100
0
70
25
25
0
48
1.51
23446--23472
14
1.9
14
100
0
54
44
7
11
37
1.68
32516--32567
29
1.9
26
85
14
70
30
1
3
63
1.23
38114--38151
19
2.0
19
85
10
51
44
0
0
55
0.99
40653--41517
439
2.0
434
82
3
1056
28
12
15
43
1.83
41601--41654
22
2.5
22
84
0
72
12
18
33
35
1.89

Tables:   1

The End!