Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014146.1 Corchorus olitorius cultivar O-4 contig14179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29361

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
810--938
65
2.0
65
84
6
172
36
20
17
25
1.94
2167--2345
97
1.9
93
83
4
232
55
5
11
26
1.57
2487--2561
31
2.5
30
82
6
82
45
22
17
14
1.85
17125--17149
12
2.1
12
100
0
50
40
16
20
24
1.91
17240--17323
10
9.0
10
70
19
56
44
0
1
54
1.07
17246--17324
7
11.1
7
77
17
65
45
0
1
53
1.08
17240--17312
29
2.7
27
82
13
89
41
0
1
57
1.07
19690--19718
7
4.3
7
91
8
51
34
27
0
37
1.57
19693--19718
13
2.0
13
100
0
52
30
30
0
38
1.58
20215--20263
25
2.0
25
91
0
80
14
30
18
36
1.90
21421--21541
32
3.8
32
84
2
109
9
12
37
41
1.75
21468--21541
16
4.6
16
80
8
78
8
13
39
39
1.74
21532--21589
23
2.5
23
80
0
62
6
18
44
29
1.76
22021--22092
31
2.3
31
75
17
78
61
8
4
26
1.43
22657--22722
23
2.9
23
90
2
80
7
21
42
28
1.80
22667--22722
23
2.4
23
100
0
112
3
21
44
30
1.69
23134--23207
29
2.5
30
77
6
78
29
12
25
32
1.92
24645--24715
28
2.5
29
95
4
135
23
14
5
56
1.59
27056--27122
31
2.2
30
89
2
98
20
19
29
29
1.97
27259--27346
28
3.2
26
79
11
86
44
5
12
37
1.66

Tables:   1

The End!