Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014147.1 Corchorus olitorius cultivar O-4 contig14180, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3125
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26


Found at i:1644 original size:58 final size:58

Alignment explanation


    Indices: 1554--1670  Score: 234
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       1544 AAGTGCAATC

                                                                      
       1554 ACTTTAAGGAGTGGAAAAGAGTTGGAAAACCCCTATCCAACCCATGCCGCAAAAGATG
          1 ACTTTAAGGAGTGGAAAAGAGTTGGAAAACCCCTATCCAACCCATGCCGCAAAAGATG

                                                                      
       1612 ACTTTAAGGAGTGGAAAAGAGTTGGAAAACCCCTATCCAACCCATGCCGCAAAAGATG
          1 ACTTTAAGGAGTGGAAAAGAGTTGGAAAACCCCTATCCAACCCATGCCGCAAAAGATG

             
       1670 A
          1 A

       1671 AGGAGAGCCG


Statistics
Matches: 59,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  58   59  1.00

ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17


Consensus pattern (58 bp):   
ACTTTAAGGAGTGGAAAAGAGTTGGAAAACCCCTATCCAACCCATGCCGCAAAAGATG
Done.