Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001415.1 Corchorus olitorius cultivar O-4 contig01415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.37


Found at i:680 original size:3 final size:3

Alignment explanation


    Indices: 658--707  Score: 66
    Period size: 3  Copynumber: 16.7  Consensus size: 3

        648 AGCGGCCCTT

                           *   *                                        
        658 TTC TTC TTTC TTT TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TT-
          1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

                  
        703 TTC TT
          1 TTC TT

        708 TTTTTTAAAA


Statistics
Matches: 43,  Mismatches: 2, Indels: 4
        0.88            0.04        0.08

Matches are distributed among these distances:
   2    2  0.05
   3   38  0.88
   4    3  0.07

ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74


Consensus pattern (3 bp):   
TTC

Done.