genome.fa.s14154.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014154.1 Corchorus olitorius cultivar O-4 contig14187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64872

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5180--5250	35	2.0	35	94	0	124	42	12	15	29	1.84
10997--11075	29	2.6	30	88	4	106	29	16	13	40	1.87
11219--11285	32	2.1	32	94	5	118	41	11	8	37	1.73
11328--11362	7	5.0	7	89	0	52	0	20	0	80	0.72
11897--12135	126	1.9	126	86	4	340	35	11	1	51	1.47
12286--12350	31	2.1	31	100	0	130	32	15	12	40	1.84
12494--12573	29	2.7	29	84	3	88	40	13	16	30	1.87
12504--12573	31	2.3	29	85	4	86	38	14	15	31	1.88
25635--25704	22	3.2	22	79	2	79	40	8	10	41	1.69
25721--25784	22	2.9	23	77	13	71	42	12	7	37	1.72
28364--28444	42	1.9	42	94	0	144	48	14	7	29	1.71
28834--28914	42	1.9	42	94	0	144	48	14	7	29	1.71
28272--29211	470	2.0	470	98	0	1819	38	13	16	30	1.88
40848--40988	71	2.0	69	88	2	210	23	14	13	48	1.78
41232--41355	61	2.0	61	98	0	239	47	15	15	21	1.82
41816--41984	91	1.9	91	91	0	275	31	17	17	33	1.93
44194--44281	29	3.0	29	81	3	106	44	36	9	10	1.70
49720--49785	29	2.3	29	97	0	123	7	37	40	13	1.73
57122--57314	97	2.0	97	91	1	316	40	8	18	32	1.81
57391--57484	45	2.2	44	90	7	149	38	21	5	35	1.76
60164--60333	91	1.9	92	92	1	288	41	8	11	38	1.72
60579--60620	21	2.0	21	90	0	66	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62845--62959	60	1.9	60	85	3	160	37	19	5	38	1.74
64418--64663	123	1.9	128	89	7	385	39	10	2	48	1.48
64649--64687	14	2.9	13	80	3	51	41	2	2	53	1.28

Tables:   1

The End!