Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014156.1 Corchorus olitorius cultivar O-4 contig14189, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88862

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
702--737
19
1.9
18
88
5
54
41
8
22
27
1.82
8172--8232
20
2.9
21
78
11
63
42
16
21
19
1.89
10775--10807
11
2.9
12
82
17
52
33
6
24
36
1.80
43769--43862
47
2.0
47
97
0
179
38
9
11
40
1.74
46896--46920
1
25.0
1
100
0
50
100
0
0
0
0.00
51173--51208
16
2.2
17
90
5
56
27
8
0
63
1.23
52541--52601
19
3.1
19
80
17
63
42
19
6
31
1.77
53258--53383
66
1.9
66
82
9
159
38
13
10
37
1.79
53258--53463
22
9.5
21
73
12
98
33
16
9
40
1.81
53383--53464
42
1.9
43
85
7
114
25
19
8
46
1.78
56321--56381
27
2.2
28
80
13
74
45
0
6
47
1.28
57223--57258
13
2.8
13
86
0
54
19
44
8
27
1.79
65035--65061
2
13.5
2
100
0
54
48
0
51
0
1.00
68535--68572
18
2.1
18
100
0
76
21
21
21
36
1.95
72741--72809
28
2.5
28
79
11
81
71
1
26
1
1.03
72742--72809
27
2.5
27
81
9
77
72
1
25
1
1.02
72742--72821
28
2.9
27
80
9
74
71
1
23
3
1.10
72881--72907
13
2.1
13
100
0
54
29
22
7
40
1.81
75868--76032
90
1.8
90
97
0
312
37
16
10
35
1.83
86332--86414
22
3.8
21
73
17
64
57
1
2
38
1.19
86334--86382
25
2.0
25
84
8
64
59
0
0
40
0.98

Tables:   1

The End!