Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014164.1 Corchorus olitorius cultivar O-4 contig14197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34459

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--409
39
10.4
39
96
0
693
28
18
20
33
1.96
607--723
45
2.5
46
77
9
139
26
23
7
41
1.81
761--793
13
2.3
15
90
10
52
0
21
0
78
0.75
4460--4537
34
2.3
34
93
0
129
28
20
19
32
1.97
7539--8057
47
11.0
47
89
2
738
28
21
4
45
1.71
8104--8146
22
1.9
23
90
4
70
16
25
2
55
1.53
16675--16725
21
2.4
21
73
0
57
68
0
23
7
1.15
22920--22950
2
15.5
2
93
0
53
48
3
0
48
1.17
24270--24306
2
19.0
2
94
5
67
51
0
0
48
1.00
27354--27381
5
5.6
5
100
0
56
0
35
0
64
0.94
30951--30978
14
2.0
14
100
0
56
71
7
14
7
1.29
32902--32971
36
1.9
36
88
0
104
21
11
8
58
1.59
33471--33879
205
2.0
199
94
2
710
44
8
10
36
1.69
33951--33997
25
1.9
24
95
4
85
55
8
6
29
1.55
33988--34068
39
2.0
40
90
2
128
37
4
7
50
1.52

Tables:   1

The End!