Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014165.1 Corchorus olitorius cultivar O-4 contig14198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16718

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1126--1268
71
2.0
71
97
0
268
32
23
15
29
1.95
2192--2265
30
2.5
30
89
6
107
48
10
14
25
1.77
2546--2576
15
2.1
15
93
0
53
54
0
32
12
1.38
3785--3812
1
28.0
1
100
0
56
0
0
0
100
0.00
5535--5577
2
21.5
2
100
0
86
51
0
0
48
1.00
6834--6860
2
13.5
2
100
0
54
48
0
0
51
1.00
9423--9504
26
3.0
28
63
20
73
32
14
7
45
1.73
9358--10072
54
12.8
56
87
6
811
25
20
6
46
1.75
9792--9898
58
2.0
49
96
2
124
24
24
6
44
1.77
10101--10192
22
4.2
22
86
5
132
14
27
3
55
1.54
10101--10192
44
2.1
44
91
4
150
14
27
3
55
1.54
15144--15188
20
2.2
20
96
0
81
22
22
0
55
1.44

Tables:   1

The End!