Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014168.1 Corchorus olitorius cultivar O-4 contig14201, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43480

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6241--6299
30
2.0
30
93
6
102
28
16
32
22
1.96
8284--8417
48
2.8
48
87
5
175
28
18
5
47
1.72
8289--8417
47
2.7
48
86
4
172
29
17
6
46
1.73
12490--12588
33
3.1
31
84
8
126
43
23
8
25
1.81
12493--12629
33
4.2
33
79
8
111
43
20
8
27
1.81
14187--14233
26
1.9
23
87
12
67
40
4
27
27
1.75
15022--15089
30
2.3
30
100
0
136
27
20
20
30
1.98
16788--16890
32
3.2
31
87
2
134
12
11
34
40
1.80
17967--18000
4
8.5
4
93
0
50
82
0
17
0
0.67
17967--18003
12
3.1
12
92
0
56
83
0
16
0
0.64
21300--21407
53
2.0
53
100
0
216
21
11
25
41
1.86
30054--30078
2
12.5
2
100
0
50
52
0
0
48
1.00
30210--30325
58
2.0
58
96
0
214
31
8
18
42
1.80
30305--30351
22
2.1
22
100
0
94
46
4
23
25
1.70
34904--35085
95
1.9
95
87
2
267
28
20
11
40
1.87
35477--35618
71
2.0
71
95
0
257
17
9
33
38
1.83
40375--40520
33
4.5
31
78
10
123
42
21
8
27
1.82
42875--42912
18
2.1
19
90
5
60
28
13
36
21
1.91

Tables:   1

The End!